SmProt

Specific Information of Small Protein : SPROHSA249888

General Information

Small Protein ID	SPROHSA249888
Organism	Human (Homo sapiens)
Small Protein Sequence	LKKENWYSKRMVRSMLR*
RNA Sequence	CTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAA
Protein Length	17
Start Codon	CTG
Location	chr1:16685940-16685994:-
Blocks	16685940-16685994
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000280114; AL021920.2; ENSG00000236698; EIF1AXP1; NONHSAG000487;
Mass (Da)	mono. 2224.2; avg. 2225.7

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR4045276_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.045951	None	61	115	33	144.736198
SRR5047770_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.045068	None	61	115	75	110.194714

Min Ribo P value	0.045068
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR4045276_alt	Meg01 cells	WT	GSM2285909	27681415;
SRR5047770_alt	iPSC-differentiated dopamine neurons	Parkinson Disease	GSM2402496; GSM2402497; GSM2402498	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-16685957-C-T	Non-Synonymous p.R13K	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685960-A-T	Non-Synonymous p.V12D	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685973-A-T	Non-Synonymous p.S8T	.	SRR8310200

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA207909	7	ATG	-	16685940-16685964
SPROHSA144113	19	ATG	-	16685940-16686000
SPROHSA144114	19	ATG	-	20135826-20135841, 20138538-20138583
SPROHSA150857	21	ATG	-	16685940-16686006
SPROHSA150858	21	ATG	-	20135826-20135841, 20138538-20138589
SPROHSA362139	65	GTG	-	20135826-20135841, 20138538-20138622, 20141624-20141723
SPROHSA375927	79	TTG	-	20135826-20135841, 20138538-20138622, 20141624-20141765
SPROHSA61818	80	ACG	-	20135826-20135841, 20138538-20138622, 20141624-20141768
SPROHSA305117	88	CTG	-	20135826-20135841, 20138538-20138622, 20141624-20141792
SPROHSA36539	33	AAG	-	16685940-16686042