SmProt
SmProt
| Small Protein ID | SPROHSA207909 | ||
| Organism | Human (Homo sapiens) | ||
| Small Protein Sequence | MVRSMLR* | ||
| RNA Sequence | ATGGTCAGGAGTATGCTCAGGTAA | ||
| Protein Length | 7 | ||
| Start Codon | ATG | ||
| Location | chr1:16685940-16685964:- | ||
| Blocks | 16685940-16685964 | ||
| Mean PhyloCSF | 0 | ||
| Data Source | Ribosome profiling; | ||
| Related Genes | ENSG00000280114; AL021920.2; ENSG00000236698; EIF1AXP1; NONHSAG000487; | ||
| Mass (Da) | mono. 891.5; avg. 892.1 | ||
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SRR618770,618771,618772,618773_alt | ENSG00000236698.1 | ENST00000419267.1 | EIF1AXP1 | Processed_pseudogene | Novel | 0.010726 | 0.004837 | 91 | 115 | 189 | 1329.43702 |
| Min Ribo P value | 0.010726 |
| Min TIS P value | 0.004837 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|---|---|---|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
| No results |
| No results |
| No results |
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|---|---|---|---|---|---|---|---|---|---|
| No results | ||||||||||
| Disease | Detected | |
|---|---|---|
| No results | ||
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|---|---|---|
| 1-16685957-C-T | Non-Synonymous p.R3K | . | SRR5239050; SRR5239051; SRR5239052; SRR5239056 |
| 1-16685960-A-T | Non-Synonymous p.V2D | . | SRR5239050; SRR5239051; SRR5239052; SRR5239056 |
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|---|---|---|---|
| SPROHSA249888 | 17 | CTG | - | 16685940-16685994 |
| SPROHSA144113 | 19 | ATG | - | 16685940-16686000 |
| SPROHSA144114 | 19 | ATG | - | 20135826-20135841, 20138538-20138583 |
| SPROHSA150857 | 21 | ATG | - | 16685940-16686006 |
| SPROHSA150858 | 21 | ATG | - | 20135826-20135841, 20138538-20138589 |
| SPROHSA362139 | 65 | GTG | - | 20135826-20135841, 20138538-20138622, 20141624-20141723 |
| SPROHSA375927 | 79 | TTG | - | 20135826-20135841, 20138538-20138622, 20141624-20141765 |
| SPROHSA61818 | 80 | ACG | - | 20135826-20135841, 20138538-20138622, 20141624-20141768 |
| SPROHSA305117 | 88 | CTG | - | 20135826-20135841, 20138538-20138622, 20141624-20141792 |
| SPROHSA36539 | 33 | AAG | - | 16685940-16686042 |