SmProt

Specific Information of Small Protein : SPROHSA144113

General Information

Small Protein ID	SPROHSA144113
Organism	Human (Homo sapiens)
Small Protein Sequence	MNLKKENWYSKRMVRSMLR*
RNA Sequence	ATGAATCTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAA
Protein Length	19
Start Codon	ATG
Location	chr1:16685940-16686000:-
Blocks	16685940-16686000
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000280114; AL021920.2; ENSG00000236698; EIF1AXP1; NONHSAG000487;
Mass (Da)	mono. 2469.3; avg. 2471

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE45833_5	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.015116	None	55	115	42	269.801815
GSE45833_5_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.015116	None	55	115	42	269.801815
GSE45833_4	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.048811	None	55	115	38	136.837851
SRR5047772	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.028604	None	55	115	42	123.775988
SRR5350745	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.005053	None	55	115	36	352.773090
SRR5350745_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.005053	None	55	115	36	352.773090

Min Ribo P value	0.005053
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE45833_4	BJ cells	Proliferation	GSM1047589	23594524;
GSE45833_5	BJ cells	Senescence	GSM1047590	23594524;
GSE45833_5_alt	BJ cells	Senescence	GSM1047590	23594524;
SRR5047772	iPSC-differentiated dopamine neurons	Parkinson Disease	NA	NA;
SRR5350745	H1933	NSCLC	GSM2538904	28388414;
SRR5350745_alt	H1933	NSCLC	GSM2538904	28388414;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-16685957-C-T	Non-Synonymous p.R15K	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685960-A-T	Non-Synonymous p.V14D	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685973-A-T	Non-Synonymous p.S10T	.	SRR8310200

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA207909	7	ATG	-	16685940-16685964
SPROHSA249888	17	CTG	-	16685940-16685994
SPROHSA144114	19	ATG	-	20135826-20135841, 20138538-20138583
SPROHSA150857	21	ATG	-	16685940-16686006
SPROHSA150858	21	ATG	-	20135826-20135841, 20138538-20138589
SPROHSA362139	65	GTG	-	20135826-20135841, 20138538-20138622, 20141624-20141723
SPROHSA375927	79	TTG	-	20135826-20135841, 20138538-20138622, 20141624-20141765
SPROHSA61818	80	ACG	-	20135826-20135841, 20138538-20138622, 20141624-20141768
SPROHSA305117	88	CTG	-	20135826-20135841, 20138538-20138622, 20141624-20141792
SPROHSA36539	33	AAG	-	16685940-16686042