Specific Information of Small Protein : SPROHSA362139
General Information
| Small Protein ID | SPROHSA362139 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VSPLGAAAAAVAATRKEVRDAARSPPPPCPRIKVKEVKTDAGVRMRMNLKKENWYSKRMVRSMLR* |
| RNA Sequence | GTGTCGCCCCTCGGAGCAGCAGCCGCCGCGGTCGCCGCTACCCGGAAAGAAGTCAGAGACGCCGCGAGGTCGCCGCCACCGCCATGCCCAAGAATAAAGGTAAAGGAGGTAAAAACAGACGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAA |
| Protein Length | 65 |
| Start Codon | GTG |
| Location | chrX:20135826-20141723:- |
| Blocks | 20135826-20135841,20138538-20138622,20141624-20141723 |
| Mean PhyloCSF | -7.2464646393 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000173674; EIF1AX; ENSG00000201882; RF00493; ENSG00000201592; RF00494; ENSG00000225037; EIF1AX-AS1; NONHSAG054127;NONHSAG054128;NONHSAG103304; |
| Mass (Da) | mono. 7243.9; avg. 7248.6 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR618770,618771,618772,618773_alt | ENSG00000173674.11 | ENST00000379607.10 | EIF1AX | Protein_coding | 5'UTR | 0.001472 | 6.94E-10 | 115 | 313 | 458 | 390.496814 |
| SRR964946_alt | ENSG00000173674.11 | ENST00000379607.10 | EIF1AX | Protein_coding | 5'UTR | 0.025487 | 0.002088 | 115 | 313 | NA | NA |
| Min Ribo P value | 0.001472 |
| Min TIS P value | 6.94E-10 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt