SmProt

Specific Information of Small Protein : SPROHSA150857

General Information

Small Protein ID	SPROHSA150857
Organism	Human (Homo sapiens)
Small Protein Sequence	MRMNLKKENWYSKRMVRSMLR*
RNA Sequence	ATGAGAATGAATCTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAA
Protein Length	21
Start Codon	ATG
Location	chr1:16685940-16686006:-
Blocks	16685940-16686006
Mean PhyloCSF	0
Data Source	Ribosome profiling;
Related Genes	ENSG00000280114; AL021920.2; ENSG00000236698; EIF1AXP1; NONHSAG000487;
Mass (Da)	mono. 2756.4; avg. 2758.4

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE45833_3	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.00079	None	49	115	45	242.384599
GSE45785_3	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.00323	None	49	115	18	115.021316
GSE45785_3_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.00323	None	49	115	18	115.021316
GSE45833_2	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.010544	None	49	115	30	62.4184853
SRR618770,618771,618772,618773_alt	ENSG00000236698.1	ENST00000419267.1	EIF1AXP1	Processed_pseudogene	Novel	0.002263	0.005847	49	115	372	951.516256

Min Ribo P value	0.00079
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE45785_3	BJ cells	Immortalized	GSM1115210	23594524;
GSE45785_3_alt	BJ cells	Immortalized	GSM1115210	23594524;
GSE45833_2	BJ cells	Quiescence	GSM1047586; GSM1047587	23594524;
GSE45833_3	BJ cells	Pre-senescence	GSM1047588	23594524;
SRR618770,618771,618772,618773_alt	HEK293	WT	SRR618770; SRR618771; SRR618772; SRR618773	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
1-16685957-C-T	Non-Synonymous p.R17K	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685960-A-T	Non-Synonymous p.V16D	.	SRR5239050; SRR5239051; SRR5239052; SRR5239056
1-16685973-A-T	Non-Synonymous p.S12T	.	SRR8310200

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA207909	7	ATG	-	16685940-16685964
SPROHSA249888	17	CTG	-	16685940-16685994
SPROHSA144113	19	ATG	-	16685940-16686000
SPROHSA144114	19	ATG	-	20135826-20135841, 20138538-20138583
SPROHSA150858	21	ATG	-	20135826-20135841, 20138538-20138589
SPROHSA362139	65	GTG	-	20135826-20135841, 20138538-20138622, 20141624-20141723
SPROHSA375927	79	TTG	-	20135826-20135841, 20138538-20138622, 20141624-20141765
SPROHSA61818	80	ACG	-	20135826-20135841, 20138538-20138622, 20141624-20141768
SPROHSA305117	88	CTG	-	20135826-20135841, 20138538-20138622, 20141624-20141792
SPROHSA36539	33	AAG	-	16685940-16686042