SmProt
SmProt
| Small Protein ID | SPROMMU148130 | ||
| Organism | Mouse (Mus musculus) | ||
| Small Protein Sequence | ILQGRILAGKLQRTPSADVLKTSESRN* | ||
| RNA Sequence | ATTCTTCAAGGCAGAATCCTTGCAGGGAAGCTTCAAAGGACTCCATCTGCAGATGTTCTGAAAACCTCTGAGTCTAGAAATTGA | ||
| Protein Length | 27 | ||
| Start Codon | ATT | ||
| Location | chr1:12728650-12786124:+ | ||
| Blocks | 12728650-12728688,12786078-12786124 | ||
| Mean PhyloCSF | -5.53432141599 | ||
| Data Source | Ribosome profiling; | ||
| Related Genes | ENSMUSG00000016918; Sulf1; NONMMUG000117; | ||
| Mass (Da) | mono. 2950.7; avg. 2952.4 | ||
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000189541.6 | Sulf1 | Protein_coding | 5'UTR | 0.00036 | None | 173 | 257 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000189541.6 | Sulf1 | Protein_coding | 5'UTR | 0.032896 | None | 173 | 257 | 13 | 6.09805167 |
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000186051.6 | Sulf1 | Protein_coding | 5'UTR | 0.00036 | None | 210 | 294 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000186051.6 | Sulf1 | Protein_coding | 5'UTR | 0.032896 | None | 210 | 294 | 13 | 6.09805167 |
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000088585.9 | Sulf1 | Protein_coding | 5'UTR | 0.00036 | None | 312 | 396 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000088585.9 | Sulf1 | Protein_coding | 5'UTR | 0.032896 | None | 312 | 396 | 13 | 6.09805167 |
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000187376.6 | Sulf1 | Protein_coding | Novel | 0.00036 | None | 382 | 466 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000187376.6 | Sulf1 | Protein_coding | Novel | 0.032896 | None | 382 | 466 | 13 | 6.09805167 |
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000177608.7 | Sulf1 | Protein_coding | 5'UTR | 0.00036 | None | 465 | 549 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000177608.7 | Sulf1 | Protein_coding | 5'UTR | 0.032896 | None | 465 | 549 | 13 | 6.09805167 |
| GSE60095_alt | ENSMUSG00000016918.15 | ENSMUST00000186405.6 | Sulf1 | Protein_coding | 5'UTR | 0.00036 | None | 532 | 616 | 209 | 84.9551150 |
| GSE81283_1_alt | ENSMUSG00000016918.15 | ENSMUST00000186405.6 | Sulf1 | Protein_coding | 5'UTR | 0.032896 | None | 532 | 616 | 13 | 6.09805167 |
| Min Ribo P value | 0.00036 |
| Min TIS P value | None |
| No results |
| No results |
| No results |
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|---|---|---|---|---|---|---|---|---|---|
| No results | ||||||||||
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|---|---|---|---|
| SPROMMU155665 | 8 | CTG | + | 12786097-12786124 |
| SPROMMU40313 | 15 | AGG | + | 12728686-12728688, 12786078-12786124 |
| SPROMMU7570 | 28 | AAG | + | 12728647-12728688, 12786078-12786124 |
| SPROMMU84561 | 29 | ATG | + | 12728644-12728688, 12786078-12786124 |
| SPROMMU235601 | 33 | TTG | + | 12728632-12728688, 12786078-12786124 |
| SPROMMU199390 | 35 | GTG | + | 12728626-12728688, 12786078-12786124 |
| SPROMMU162258 | 45 | CTG | + | 12728596-12728688, 12786078-12786124 |
| SPROMMU146126 | 59 | ATT | + | 12692645-12692684, 12728593-12728688, 12786078-12786124 |
| SPROMMU230155 | 74 | TTG | + | 12692600-12692684, 12728593-12728688, 12786078-12786124 |