Specific Information of Small Protein : SPROHSA290599
General Information
Small Protein IDSPROHSA290599
OrganismHuman (Homo sapiens)
Small Protein SequenceLDECQLLHFPCVSCDHSIWEHPSKSSCILLRTPDLLKLHNSHLDVTGLSHVNSSDHVLLYMPSAPSQDSYKRRNDEHP*
RNA SequenceCTGGATGAATGCCAACTTTTGCATTTCCCATGTGTATCCTGTGACCATTCTATCTGGGAACATCCTTCAAAGAGTTCATGCATCTTACTGAGGACACCTGACCTTTTGAAGCTTCATAATTCACATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAG
Protein Length78
Start CodonCTG
Locationchr6:98926881-98927762:-
Blocks98926881-98927060,98927704-98927762
Mean PhyloCSF-4.19571730759
Data SourceRibosome profiling;
Related GenesENSG00000112234; FBXL4; NONHSAG044429;
Mass (Da)mono. 8896.3; avg. 8901.9
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE45833_4_altENSG00000112234.9ENST00000229971.2FBXL4Protein_coding5'UTR0.007047None26149887.29315664
GSE103308_altENSG00000112234.9ENST00000229971.2FBXL4Protein_coding5'UTR0.02082None2614983814.2622358
SRR618770,618771,618772,618773_altENSG00000112234.9ENST00000229971.2FBXL4Protein_coding5'UTR1.506E-050.0028592614986647.0124406
GSE45833_4_altENSG00000112234.9ENST00000369244.7FBXL4Protein_coding5'UTR0.007047None31955687.29315664
GSE103308_altENSG00000112234.9ENST00000369244.7FBXL4Protein_coding5'UTR0.02082None3195563814.2622358
SRR618770,618771,618772,618773_altENSG00000112234.9ENST00000369244.7FBXL4Protein_coding5'UTR1.506E-050.0028593195566647.0124406
Min Ribo P value1.506E-05
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE103308_altRD-muscleWTGSM276024729696588;
GSE45833_4_altBJ cellsProliferationGSM104758923594524;
SRR618770,618771,618772,618773_altHEK293WTSRR618770; SRR618771; SRR618772; SRR618773NA;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
6-98926884-A-TStop Loss p.*79Krs34316889SRR627627
6-98927762-G-TNon-Synonymous p.L1Mrs195812SRR5047770; SRR5047771; SRR5047772; SRR5350744; SRR1333393; SRR1333394; SRR1795425; SRR1795427; SRR1795428; SRR618771
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA108908AAG-98926881-98926908
SPROHSA17082118ATG-98926881-98926938
SPROHSA2371242AAG-98926881-98927010
SPROHSA6604248AGG-98926881-98927028
SPROHSA25935549CTG-98926881-98927031
SPROHSA13452951ATC-98926881-98927037
SPROHSA37432472TTG-98926881-98927060, 98927704-98927744
SPROHSA16077084ATG-98926881-98927060, 98927704-98927780
SPROHSA21429993ATG-98926881-98927060, 98927704-98927807