Specific Information of Small Protein : SPROHSA290599
General Information
| Small Protein ID | SPROHSA290599 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LDECQLLHFPCVSCDHSIWEHPSKSSCILLRTPDLLKLHNSHLDVTGLSHVNSSDHVLLYMPSAPSQDSYKRRNDEHP* |
| RNA Sequence | CTGGATGAATGCCAACTTTTGCATTTCCCATGTGTATCCTGTGACCATTCTATCTGGGAACATCCTTCAAAGAGTTCATGCATCTTACTGAGGACACCTGACCTTTTGAAGCTTCATAATTCACATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAG |
| Protein Length | 78 |
| Start Codon | CTG |
| Location | chr6:98926881-98927762:- |
| Blocks | 98926881-98927060,98927704-98927762 |
| Mean PhyloCSF | -4.19571730759 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000112234; FBXL4; NONHSAG044429; |
| Mass (Da) | mono. 8896.3; avg. 8901.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_4_alt | ENSG00000112234.9 | ENST00000229971.2 | FBXL4 | Protein_coding | 5'UTR | 0.007047 | None | 261 | 498 | 8 | 7.29315664 |
| GSE103308_alt | ENSG00000112234.9 | ENST00000229971.2 | FBXL4 | Protein_coding | 5'UTR | 0.02082 | None | 261 | 498 | 38 | 14.2622358 |
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000229971.2 | FBXL4 | Protein_coding | 5'UTR | 1.506E-05 | 0.002859 | 261 | 498 | 66 | 47.0124406 |
| GSE45833_4_alt | ENSG00000112234.9 | ENST00000369244.7 | FBXL4 | Protein_coding | 5'UTR | 0.007047 | None | 319 | 556 | 8 | 7.29315664 |
| GSE103308_alt | ENSG00000112234.9 | ENST00000369244.7 | FBXL4 | Protein_coding | 5'UTR | 0.02082 | None | 319 | 556 | 38 | 14.2622358 |
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000369244.7 | FBXL4 | Protein_coding | 5'UTR | 1.506E-05 | 0.002859 | 319 | 556 | 66 | 47.0124406 |
| Min Ribo P value | 1.506E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE103308_alt | RD-muscle | WT | GSM2760247 | 29696588; |
| GSE45833_4_alt | BJ cells | Proliferation | GSM1047589 | 23594524; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 6-98926884-A-T | Stop Loss p.*79K | rs34316889 | SRR627627 |
| 6-98927762-G-T | Non-Synonymous p.L1M | rs195812 | SRR5047770; SRR5047771; SRR5047772; SRR5350744; SRR1333393; SRR1333394; SRR1795425; SRR1795427; SRR1795428; SRR618771 |
Related Small Proteins with Different TISs
SmProt