Specific Information of Small Protein : SPROHSA259355
General Information
| Small Protein ID | SPROHSA259355 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LRTPDLLKLHNSHLDVTGLSHVNSSDHVLLYMPSAPSQDSYKRRNDEHP* |
| RNA Sequence | CTGAGGACACCTGACCTTTTGAAGCTTCATAATTCACATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAG |
| Protein Length | 49 |
| Start Codon | CTG |
| Location | chr6:98926881-98927031:- |
| Blocks | 98926881-98927031 |
| Mean PhyloCSF | -4.01229332884 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000112234; FBXL4; NONHSAG044429; |
| Mass (Da) | mono. 5588.8; avg. 5592.1 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000229971.2 | FBXL4 | Protein_coding | 5'UTR | 2.592E-05 | 0.002859 | 348 | 498 | 45 | 50.6452201 |
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000369244.7 | FBXL4 | Protein_coding | 5'UTR | 2.592E-05 | 0.002859 | 406 | 556 | 45 | 50.6452201 |
| Min Ribo P value | 2.592E-05 |
| Min TIS P value | 0.002859 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 6-98926884-A-T | Stop Loss p.*50K | rs34316889 | SRR627627 |
Related Small Proteins with Different TISs
SmProt