Specific Information of Small Protein : SPROHSA134529
General Information
| Small Protein ID | SPROHSA134529 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | ILLRTPDLLKLHNSHLDVTGLSHVNSSDHVLLYMPSAPSQDSYKRRNDEHP* |
| RNA Sequence | ATCTTACTGAGGACACCTGACCTTTTGAAGCTTCATAATTCACATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATGTTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAG |
| Protein Length | 51 |
| Start Codon | ATC |
| Location | chr6:98926881-98927037:- |
| Blocks | 98926881-98927037 |
| Mean PhyloCSF | -3.95730128044 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000112234; FBXL4; NONHSAG044429; |
| Mass (Da) | mono. 5815; avg. 5818.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000229971.2 | FBXL4 | Protein_coding | 5'UTR | 9.547E-06 | 0.002859 | 342 | 498 | 47 | 50.8616526 |
| SRR618770,618771,618772,618773_alt | ENSG00000112234.9 | ENST00000369244.7 | FBXL4 | Protein_coding | 5'UTR | 9.547E-06 | 0.002859 | 400 | 556 | 47 | 50.8616526 |
| Min Ribo P value | 9.547E-06 |
| Min TIS P value | 0.002859 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 6-98926884-A-T | Stop Loss p.*52K | rs34316889 | SRR627627 |
Related Small Proteins with Different TISs
SmProt