Specific Information of Small Protein : SPROHSA170821
General Information
Small Protein IDSPROHSA170821
OrganismHuman (Homo sapiens)
Small Protein SequenceMPSAPSQDSYKRRNDEHP*
RNA SequenceATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAG
Protein Length18
Start CodonATG
Locationchr6:98926881-98926938:-
Blocks98926881-98926938
Mean PhyloCSF-5.54264913107
Data SourceRibosome profiling;
Related GenesENSG00000112234; FBXL4; NONHSAG044429;
Mass (Da)mono. 2114; avg. 2115.2
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE45833_5ENSG00000112234.9ENST00000229971.2FBXL4Protein_codingInternal0.029709None441498640.5717015
GSE45833_5ENSG00000112234.9ENST00000369244.7FBXL4Protein_codingInternal0.029709None499556640.5717015
Min Ribo P value0.029709
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE45833_5BJ cellsSenescenceGSM104759023594524;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
6-98926884-A-TStop Loss p.*19Krs34316889SRR627627
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA108908AAG-98926881-98926908
SPROHSA2371242AAG-98926881-98927010
SPROHSA6604248AGG-98926881-98927028
SPROHSA25935549CTG-98926881-98927031
SPROHSA13452951ATC-98926881-98927037
SPROHSA37432472TTG-98926881-98927060, 98927704-98927744
SPROHSA29059978CTG-98926881-98927060, 98927704-98927762
SPROHSA16077084ATG-98926881-98927060, 98927704-98927780
SPROHSA21429993ATG-98926881-98927060, 98927704-98927807