SmProt

Specific Information of Small Protein : SPROHSA248629

General Information

Small Protein ID	SPROHSA248629
Organism	Human (Homo sapiens)
Small Protein Sequence	ILWEN*
RNA Sequence	ATTTTATGGGAAAATTAA
Protein Length	5
Start Codon	ATT
Location	chr14:58291679-58291697:-
Blocks	58291679-58291697
Mean PhyloCSF	-8.757999897
Data Source	Ribosome profiling;
Related Genes	ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; NONHSAG015097;NONHSAG015108;
Mass (Da)	mono. 673.3; avg. 673.8

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE105082_alt	ENSG00000257621.8	ENST00000553657.5	PSMA3-AS1	LncRNA	Novel	0.017507	None	213	231	10	37.7526819
GSE105082_alt	ENSG00000257621.8	ENST00000557660.5	PSMA3-AS1	LncRNA	Novel	0.017507	None	2222	2240	10	37.7526819
GSE105082_alt	ENSG00000257621.8	ENST00000555037.1	PSMA3-AS1	LncRNA	Novel	0.017507	None	262	280	10	37.7526819
GSE105082_alt	ENSG00000257621.8	ENST00000551597.6	PSMA3-AS1	LncRNA	Novel	0.017507	None	419	437	10	37.7526819

Min Ribo P value	0.017507
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE105082_alt	HELA	Cervical cancer	GSM2817679; GSM2817680	30591072;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA262585	6	CTG	-	58291679-58291700
SPROHSA349398	19	GTG	-	58291679-58291707, 58297954-58297986
SPROHSA391168	34	TTG	-	58291679-58291707, 58297954-58298031
SPROHSA83869	45	AGG	-	58291679-58291707, 58297954-58298064
SPROHSA295393	48	CTG	-	58291679-58291707, 58297954-58298073
SPROHSA225666	50	ATG	-	58291679-58291707, 58297954-58298079
SPROHSA349500	58	GTG	-	58291679-58291707, 58297954-58298103
SPROHSA65165	17	AGG	-	58291679-58291707, 58293065-58293091
SPROHSA225311	19	ATG	-	58291679-58291707, 58293065-58293097
SPROHSA170605	32	ATG	-	58291679-58291707, 58293313-58293384