Specific Information of Small Protein : SPROHSA349398
General Information
Small Protein IDSPROHSA349398
OrganismHuman (Homo sapiens)
Small Protein SequenceVAGGVSELSERIRLILWEN*
RNA SequenceGTGGCCGGAGGAGTCTCAGAGCTGTCAGAAAGAATAAGACTGATTTTATGGGAAAATTAA
Protein Length19
Start CodonGTG
Locationchr14:58291679-58297986:-
Blocks58291679-58291707,58297954-58297986
Mean PhyloCSF-8.34709997177
Data SourceRibosome profiling;
Related GenesENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108;
Mass (Da)mono. 2140.2; avg. 2141.4
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR3208885_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.017353None1161761647.9096366
GSE58207_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.0193840.0039141161763153.2097000
GSE94613_2_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.007526None1161762276.2974591
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.0097542.053E-0611617651143.494790
SRR964946_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.0191260.026586116176NANA
SRR3208885_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.017353None1291891647.9096366
GSE58207_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.0193840.0369811291893153.2097000
GSE94613_2_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.007526None1291892276.2974591
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.0097545.089E-0512918951143.494790
SRR964946_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.0191260.046275129189NANA
SRR3208885_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.017353None1361961647.9096366
GSE58207_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.0193840.0369811361963153.2097000
GSE94613_2_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.007526None1361962276.2974591
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.0097545.089E-0513619651143.494790
SRR964946_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.0191260.026586136196NANA
SRR3208885_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.017353None1432031647.9096366
SRR3208885_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.017353None1432031647.9096366
GSE58207_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.0193840.0039141432033153.2097000
GSE58207_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.0193840.0039141432033153.2097000
GSE94613_2_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.007526None1432032276.2974591
GSE94613_2_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.007526None1432032276.2974591
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.0097543.612E-0814320351143.494790
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.0097543.612E-0814320351143.494790
SRR964946_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.0191260.012865143203NANA
SRR964946_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.0191260.012865143203NANA
SRR3208885_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.017353None1482081647.9096366
GSE58207_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.0193840.0369811482083153.2097000
GSE94613_2_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.007526None1482082276.2974591
SRR618770,618771,618772,618773_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.0097545.089E-0514820851143.494790
SRR964946_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.0191260.046275148208NANA
SRR3208885_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.017353None1532131647.9096366
GSE58207_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.0193840.0369811532133153.2097000
GSE94613_2_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.007526None1532132276.2974591
SRR618770,618771,618772,618773_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.0097540.00061315321351143.494790
SRR964946_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.0191260.046275153213NANA
Min Ribo P value0.007526
Min TIS P value3.612E-08
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE58207_altHCT116Colorectal carcinomaGSM1403307; GSM140330825510491;
GSE94613_2_altMOLM13Acute myeloid leukemiaGSM248105329186125;
SRR3208885_altES cell-derived neurons TSC2+/+WTGSM208253727655340;
SRR618770,618771,618772,618773_altHEK293WTSRR618770; SRR618771; SRR618772; SRR618773NA;
SRR964946_altHEK293WTSRR96494622927429;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA2486295ATT-58291679-58291697
SPROHSA2625856CTG-58291679-58291700
SPROHSA39116834TTG-58291679-58291707, 58297954-58298031
SPROHSA8386945AGG-58291679-58291707, 58297954-58298064
SPROHSA29539348CTG-58291679-58291707, 58297954-58298073
SPROHSA22566650ATG-58291679-58291707, 58297954-58298079
SPROHSA34950058GTG-58291679-58291707, 58297954-58298103