Specific Information of Small Protein : SPROHSA391168
General Information
| Small Protein ID | SPROHSA391168 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LCGRPPPFPPGQHLVVAGGVSELSERIRLILWEN* |
| RNA Sequence | TTGTGCGGCCGTCCTCCACCGTTTCCTCCAGGACAGCACCTAGTCGTGGCCGGAGGAGTCTCAGAGCTGTCAGAAAGAATAAGACTGATTTTATGGGAAAATTAA |
| Protein Length | 34 |
| Start Codon | TTG |
| Location | chr14:58291679-58298031:- |
| Blocks | 58291679-58291707,58297954-58298031 |
| Mean PhyloCSF | -8.18379042035 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 3736; avg. 3738.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE58207_alt | ENSG00000257621.8 | ENST00000556002.5 | PSMA3-AS1 | LncRNA | Novel | 0.008043 | 0.040878 | 71 | 176 | 37 | 36.2904866 |
| GSE58207_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.008043 | 0.040878 | 98 | 203 | 37 | 36.2904866 |
| GSE58207_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.008043 | 0.040878 | 98 | 203 | 37 | 36.2904866 |
| Min Ribo P value | 0.008043 |
| Min TIS P value | 0.040878 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt