Specific Information of Small Protein : SPROHSA295393
General Information
Small Protein IDSPROHSA295393
OrganismHuman (Homo sapiens)
Small Protein SequenceLARRERSFHQVDWFLCGRPPPFPPGQHLVVAGGVSELSERIRLILWEN*
RNA SequenceCTGGCGAGAAGGGAACGGAGTTTTCATCAGGTAGATTGGTTTTTGTGCGGCCGTCCTCCACCGTTTCCTCCAGGACAGCACCTAGTCGTGGCCGGAGGAGTCTCAGAGCTGTCAGAAAGAATAAGACTGATTTTATGGGAAAATTAA
Protein Length48
Start CodonCTG
Locationchr14:58291679-58298073:-
Blocks58291679-58291707,58297954-58298073
Mean PhyloCSF-7.98770064075
Data SourceRibosome profiling;
Related GenesENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108;
Mass (Da)mono. 5563.9; avg. 5567.4
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE45785_3_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.000352None291762983.2013601
GSE45785_1_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.027518None291761984.7374325
SRR3208921_altENSG00000257621.8ENST00000556002.5PSMA3-AS1LncRNANovel0.003145None291761421.1699299
GSE45785_3_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.000352None421892983.2013601
GSE45785_1_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.027518None421891984.7374325
SRR3208921_altENSG00000257621.8ENST00000556400.5PSMA3-AS1LncRNANovel0.003145None421891421.1699299
GSE45785_3_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.000352None491962983.2013601
GSE45785_1_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.027518None491961984.7374325
SRR3208921_altENSG00000257621.8ENST00000555275.5PSMA3-AS1LncRNANovel0.003145None491961421.1699299
GSE45785_3_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.000352None562032983.2013601
GSE45785_1_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.027518None562031984.7374325
GSE45785_3_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.000352None562032983.2013601
GSE45785_1_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.027518None562031984.7374325
SRR3208921_altENSG00000257621.8ENST00000554360.5PSMA3-AS1LncRNANovel0.003145None562031421.1699299
SRR3208921_altENSG00000257621.8ENST00000555707.5PSMA3-AS1LncRNANovel0.003145None562031421.1699299
GSE45785_3_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.000352None612082983.2013601
GSE45785_1_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.027518None612081984.7374325
SRR3208921_altENSG00000257621.8ENST00000554378.5PSMA3-AS1LncRNANovel0.003145None612081421.1699299
GSE45785_3_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.000352None662132983.2013601
GSE45785_1_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.027518None662131984.7374325
SRR3208921_altENSG00000139971.15ENST00000554218.1ARMH4Protein_codingNovel0.003145None662131421.1699299
Min Ribo P value0.000352
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE45785_1_altBJ cellsWTGSM111520423594524;
GSE45785_3_altBJ cellsImmortalizedGSM111521023594524;
SRR3208921_altES cell-derived neurons TSC2-/-Tuberous sclerosis complexGSM208257327655340;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA2486295ATT-58291679-58291697
SPROHSA2625856CTG-58291679-58291700
SPROHSA34939819GTG-58291679-58291707, 58297954-58297986
SPROHSA39116834TTG-58291679-58291707, 58297954-58298031
SPROHSA8386945AGG-58291679-58291707, 58297954-58298064
SPROHSA22566650ATG-58291679-58291707, 58297954-58298079
SPROHSA34950058GTG-58291679-58291707, 58297954-58298103