Specific Information of Small Protein : SPROHSA349500
General Information
| Small Protein ID | SPROHSA349500 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VAVAPSHFMFLARRERSFHQVDWFLCGRPPPFPPGQHLVVAGGVSELSERIRLILWEN* |
| RNA Sequence | GTGGCCGTAGCTCCATCGCATTTTATGTTTCTGGCGAGAAGGGAACGGAGTTTTCATCAGGTAGATTGGTTTTTGTGCGGCCGTCCTCCACCGTTTCCTCCAGGACAGCACCTAGTCGTGGCCGGAGGAGTCTCAGAGCTGTCAGAAAGAATAAGACTGATTTTATGGGAAAATTAA |
| Protein Length | 58 |
| Start Codon | GTG |
| Location | chr14:58291679-58298103:- |
| Blocks | 58291679-58291707,58297954-58298103 |
| Mean PhyloCSF | -7.63890957159 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 6650.5; avg. 6654.6 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_2_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.001847 | None | 12 | 189 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 7.636E-05 | None | 12 | 189 | 54 | 72.2565921 |
| GSE129869_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.012554 | None | 12 | 189 | 9 | 92.2985533 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 7.984E-06 | None | 12 | 189 | 76 | 29.1783439 |
| SRR5350740_alt | ENSG00000257621.8 | ENST00000556400.5 | PSMA3-AS1 | LncRNA | Novel | 0.038633 | None | 12 | 189 | 32 | 66.4423489 |
| GSE45833_2_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.001847 | None | 19 | 196 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 7.636E-05 | None | 19 | 196 | 54 | 72.2565921 |
| GSE129869_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.012554 | None | 19 | 196 | 9 | 92.2985533 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 7.984E-06 | None | 19 | 196 | 76 | 29.1783439 |
| SRR5350740_alt | ENSG00000257621.8 | ENST00000555275.5 | PSMA3-AS1 | LncRNA | Novel | 0.038633 | None | 19 | 196 | 32 | 66.4423489 |
| GSE45833_2_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.001847 | None | 26 | 203 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 7.636E-05 | None | 26 | 203 | 54 | 72.2565921 |
| GSE45833_2_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.001847 | None | 26 | 203 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 7.636E-05 | None | 26 | 203 | 54 | 72.2565921 |
| GSE129869_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.012554 | None | 26 | 203 | 9 | 92.2985533 |
| GSE129869_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.012554 | None | 26 | 203 | 9 | 92.2985533 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 7.984E-06 | None | 26 | 203 | 76 | 29.1783439 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 7.984E-06 | None | 26 | 203 | 76 | 29.1783439 |
| SRR5350740_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.038633 | None | 26 | 203 | 32 | 66.4423489 |
| SRR5350740_alt | ENSG00000257621.8 | ENST00000555707.5 | PSMA3-AS1 | LncRNA | Novel | 0.038633 | None | 26 | 203 | 32 | 66.4423489 |
| GSE45833_2_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.001847 | None | 31 | 208 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 7.636E-05 | None | 31 | 208 | 54 | 72.2565921 |
| GSE129869_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.012554 | None | 31 | 208 | 9 | 92.2985533 |
| GSE105082_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 7.984E-06 | None | 31 | 208 | 76 | 29.1783439 |
| SRR5350740_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.038633 | None | 31 | 208 | 32 | 66.4423489 |
| GSE45833_2_alt | ENSG00000139971.15 | ENST00000554218.1 | ARMH4 | Protein_coding | Novel | 0.001847 | None | 36 | 213 | 18 | 13.9648136 |
| SRR4045276_alt | ENSG00000139971.15 | ENST00000554218.1 | ARMH4 | Protein_coding | Novel | 7.636E-05 | None | 36 | 213 | 54 | 72.2565921 |
| GSE129869_alt | ENSG00000139971.15 | ENST00000554218.1 | ARMH4 | Protein_coding | Novel | 0.012554 | None | 36 | 213 | 9 | 92.2985533 |
| GSE105082_alt | ENSG00000139971.15 | ENST00000554218.1 | ARMH4 | Protein_coding | Novel | 7.984E-06 | None | 36 | 213 | 76 | 29.1783439 |
| SRR5350740_alt | ENSG00000139971.15 | ENST00000554218.1 | ARMH4 | Protein_coding | Novel | 0.038633 | None | 36 | 213 | 32 | 66.4423489 |
| Min Ribo P value | 7.984E-06 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE129869_alt | Foreskin Fibroblasts | WT | GSM3723750; GSM3723751; GSM3723752 | 31167946; |
| GSE45833_2_alt | BJ cells | Quiescence | GSM1047586; GSM1047587 | 23594524; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt