Specific Information of Small Protein : SPROHSA225311
General Information
| Small Protein ID | SPROHSA225311 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MFRNTNKLFSRIRLILWEN* |
| RNA Sequence | ATGTTTAGGAATACTAACAAATTATTTTCAAGAATAAGACTGATTTTATGGGAAAATTAA |
| Protein Length | 19 |
| Start Codon | ATG |
| Location | chr14:58291679-58293097:- |
| Blocks | 58291679-58291707,58293065-58293097 |
| Mean PhyloCSF | -8.81968328158 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000252782; RNU6-341P; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 2450.3; avg. 2451.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.025413 | None | 171 | 231 | 16 | 63.1576138 |
| GSE105082 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.031227 | None | 171 | 231 | 10 | 11.3258045 |
| SRR5047770 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.03339 | None | 171 | 231 | 29 | 38.3477605 |
| SRR5047770_alt | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.03339 | None | 171 | 231 | 29 | 38.3477605 |
| SRR5047771 | ENSG00000257621.8 | ENST00000553657.5 | PSMA3-AS1 | LncRNA | Novel | 0.0442 | None | 171 | 231 | 23 | 17.5306783 |
| SRR4045276 | ENSG00000257621.8 | ENST00000555037.1 | PSMA3-AS1 | LncRNA | Novel | 0.025413 | None | 220 | 280 | 16 | 63.1576138 |
| GSE105082 | ENSG00000257621.8 | ENST00000555037.1 | PSMA3-AS1 | LncRNA | Novel | 0.031227 | None | 220 | 280 | 10 | 11.3258045 |
| SRR5047770 | ENSG00000257621.8 | ENST00000555037.1 | PSMA3-AS1 | LncRNA | Novel | 0.03339 | None | 220 | 280 | 29 | 38.3477605 |
| SRR5047770_alt | ENSG00000257621.8 | ENST00000555037.1 | PSMA3-AS1 | LncRNA | Novel | 0.03339 | None | 220 | 280 | 29 | 38.3477605 |
| SRR5047771 | ENSG00000257621.8 | ENST00000555037.1 | PSMA3-AS1 | LncRNA | Novel | 0.0442 | None | 220 | 280 | 23 | 17.5306783 |
| Min Ribo P value | 0.025413 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082 | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| SRR4045276 | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR5047770 | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt