Specific Information of Small Protein : SPROHSA389371
General Information
| Small Protein ID | SPROHSA389371 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LYRNVKNIYVCFTCGMKKMRTSGQNCLSSEFHAGRKVRRNF* |
| RNA Sequence | TTGTATAGAAATGTAAAAAACATTTATGTGTGCTTCACATGTGGCATGAAAAAAATGAGGACCTCTGGTCAAAATTGCCTGAGTTCAGAATTTCATGCTGGAAGGAAAGTTAGACGTAACTTCTAA |
| Protein Length | 41 |
| Start Codon | TTG |
| Location | chr3:101782118-101782244:+ |
| Blocks | 101782118-101782244 |
| Mean PhyloCSF | -8.68816664105 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000144815; NXPE3; |
| Mass (Da) | mono. 4841.4; avg. 4844.7 |
Ribosome profiling
| Min Ribo P value | 0.022435 |
| Min TIS P value | 0.040878 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 3-101782136-A-C | Non-Synonymous p.K6N | rs2466368 | SRR4045276; SRR5047770; SRR5047772; SRR7207252 |
Related Small Proteins with Different TISs
SmProt