Specific Information of Small Protein : SPROHSA122104
General Information
| Small Protein ID | SPROHSA122104 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IPGPRRAKGGRVPEQEELYRNVKNIYVCFTCGMKKMRTSGQNCLSSEFHAGRKVRRNF* |
| RNA Sequence | ATCCCTGGCCCCCGGAGAGCGAAGGGCGGGCGGGTCCCGGAGCAAGAAGAATTGTATAGAAATGTAAAAAACATTTATGTGTGCTTCACATGTGGCATGAAAAAAATGAGGACCTCTGGTCAAAATTGCCTGAGTTCAGAATTTCATGCTGGAAGGAAAGTTAGACGTAACTTCTAA |
| Protein Length | 58 |
| Start Codon | ATC |
| Location | chr3:101779282-101782244:+ |
| Blocks | 101779282-101779324,101782109-101782244 |
| Mean PhyloCSF | -8.77030505568 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000144815; NXPE3; |
| Mass (Da) | mono. 6698.4; avg. 6702.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5512738_alt | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.031429 | None | 72 | 249 | 17 | 12.1755426 |
| GSE45833_4_alt | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.014682 | None | 72 | 249 | 18 | 21.9721795 |
| Min Ribo P value | 0.014682 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45833_4_alt | BJ cells | Proliferation | GSM1047589 | 23594524; |
| SRR5512738_alt | GM19147-Lymphoblastoid Cell Line | WT | GSM2601312 | 29950183; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 3-101782136-A-C | Non-Synonymous p.K23N | rs2466368 | SRR4045276; SRR5047770; SRR5047772; SRR7207252 |
Related Small Proteins with Different TISs
SmProt