Specific Information of Small Protein : SPROHSA153857
General Information
| Small Protein ID | SPROHSA153857 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MRTSGQNCLSSEFHAGRKVRRNF* |
| RNA Sequence | ATGAGGACCTCTGGTCAAAATTGCCTGAGTTCAGAATTTCATGCTGGAAGGAAAGTTAGACGTAACTTCTAA |
| Protein Length | 23 |
| Start Codon | ATG |
| Location | chr3:101782172-101782244:+ |
| Blocks | 101782172-101782244 |
| Mean PhyloCSF | -8.43087494373 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000144815; NXPE3; |
| Mass (Da) | mono. 2680.3; avg. 2682 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_1 | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 177 | 249 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 177 | 249 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 177 | 249 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 177 | 249 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.029112 | None | 177 | 249 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.000237 | None | 177 | 249 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000273347.10 | NXPE3 | Protein_coding | 5'UTR | 0.002466 | None | 177 | 249 | 122 | 77.4906796 |
| GSE45833_1 | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 343 | 415 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 343 | 415 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 343 | 415 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 343 | 415 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.029112 | None | 343 | 415 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.000237 | None | 343 | 415 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000474165.5 | NXPE3 | Protein_coding | 5'UTR | 0.002466 | None | 343 | 415 | 122 | 77.4906796 |
| GSE45833_1 | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 353 | 425 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 353 | 425 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 353 | 425 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 353 | 425 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.029112 | None | 353 | 425 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.000237 | None | 353 | 425 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000495842.5 | NXPE3 | Protein_coding | 5'UTR | 0.002466 | None | 353 | 425 | 122 | 77.4906796 |
| GSE45833_1 | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 467 | 539 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 467 | 539 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 467 | 539 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 467 | 539 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.029112 | None | 467 | 539 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.000237 | None | 467 | 539 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000477909.5 | NXPE3 | Protein_coding | 5'UTR | 0.002466 | None | 467 | 539 | 122 | 77.4906796 |
| GSE45833_1 | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.010329 | None | 503 | 575 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.010329 | None | 503 | 575 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.020119 | None | 503 | 575 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.020119 | None | 503 | 575 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.029112 | None | 503 | 575 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.000237 | None | 503 | 575 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000487830.1 | NXPE3 | Protein_coding | Novel | 0.002466 | None | 503 | 575 | 122 | 77.4906796 |
| GSE45833_1 | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 522 | 594 | 9 | 19.5349189 |
| GSE45833_1_alt | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.010329 | None | 522 | 594 | 9 | 19.5349189 |
| GSE45785_2 | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 522 | 594 | 11 | 90.4404390 |
| GSE45785_2_alt | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.020119 | None | 522 | 594 | 11 | 90.4404390 |
| SRR3208921 | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.029112 | None | 522 | 594 | 12 | 37.0473773 |
| SRR5047772 | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.000237 | None | 522 | 594 | 49 | 120.337766 |
| SRR5047771 | ENSG00000144815.16 | ENST00000491511.6 | NXPE3 | Protein_coding | 5'UTR | 0.002466 | None | 522 | 594 | 122 | 77.4906796 |
| Min Ribo P value | 0.000237 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_2 | BJ cells | Immortalized | GSM1115207 | 23594524; |
| GSE45785_2_alt | BJ cells | Immortalized | GSM1115207 | 23594524; |
| GSE45833_1 | BJ cells | Proliferation | GSM1047584; GSM1047585 | 23594524; |
| GSE45833_1_alt | BJ cells | Proliferation | GSM1047584; GSM1047585 | 23594524; |
| SRR3208921 | ES cell-derived neurons TSC2-/- | Tuberous sclerosis complex | GSM2082573 | 27655340; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| SRR5047772 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| Coils | Coil | | 20 | 23 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt