Specific Information of Small Protein : SPROHSA267355
General Information
Small Protein IDSPROHSA267355
OrganismHuman (Homo sapiens)
Small Protein SequenceLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP*
RNA SequenceCTGCATGCAGCCATCCGGGAGGTGGATATCAAGGGCGTGTTTCGATACTGCAACACGTGGCCAGTGGCGATTTCGATGCTTGCGTCCAAGTCTGTGAATGTAAAACCCCTCGTCACCCATAGGTTTCCTCTGGAGAAAGCTCTGGAGGCCTTTGAAACATTTAAAAAGGGATTGGGGTTGAAAATCATGCTCAAGTGTGACCCCAGTGACCAGAATCCCTGA
Protein Length73
Start CodonCTG
Locationchr15:44827055-44828505:-
Blocks44827055-44827221,44828449-44828505
Mean PhyloCSF-4.65575226578
Data SourceRibosome profiling;
Related GenesENSG00000259479; SORD2P; ENSG00000259187; AC122108.1; NONHSAG016753;NONHSAG016754;
Mass (Da)mono. 8207.4; avg. 8212.6
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE45833_5_altENSG00000259479.6ENST00000562107.1SORD2PTranscribed_unprocessed_pseudogeneNovel0.036035None22644835.20852924
SRR5047770_altENSG00000259479.6ENST00000562107.1SORD2PTranscribed_unprocessed_pseudogeneNovel2.224E-07None2264483010.7216478
GSE45833_5_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.036035None26748935.20852924
SRR5047770_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel2.224E-07None2674893010.7216478
GSE45833_5_altENSG00000259479.6ENST00000561384.3SORD2PTranscribed_unprocessed_pseudogeneNovel0.036035None967118935.20852924
SRR5047770_altENSG00000259479.6ENST00000561384.3SORD2PTranscribed_unprocessed_pseudogeneNovel2.224E-07None96711893010.7216478
Min Ribo P value2.224E-07
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE45833_5_altBJ cellsSenescenceGSM104759023594524;
SRR5047770_altiPSC-differentiated dopamine neuronsParkinson DiseaseGSM2402496; GSM2402497; GSM2402498NA;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
Gene3DG3DSA:3.40.50.7202145.2E-17T
PANTHERPTHR431612693.3E-21T
SUPERFAMILYSSF5012912649.18E-5TIPR011032GroES-like superfamily
PANTHERPTHR43161:SF92693.3E-21T
Gene3DG3DSA:3.90.180.1015555.2E-17T
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA11740312ATC+45073491-45073530
SPROHSA38728116TTG-44827055-44827106
SPROHSA3477818AAG-44827055-44827112
SPROHSA3477918AAG+45073473-45073530
SPROHSA28873626CTG-44827055-44827136
SPROHSA28873726CTG+45073449-45073530
SPROHSA17871448ATG-44827055-44827202
SPROHSA24637750ATT+45073377-45073530
SPROHSA6093555ACG+45072436-45072438, 45073364-45073530
SPROHSA11215064ATC+45072409-45072438, 45073364-45073530
SPROHSA14700879ATG-44827055-44827221, 44828449-44828523
SPROHSA30247583CTG-44827055-44827221, 44828449-44828535
SPROHSA30247683CTG+45072352-45072438, 45073364-45073530
SPROHSA35611885GTG-44827055-44827221, 44828449-44828541
SPROHSA33913087GTG-44827055-44827221, 44828449-44828547
SPROHSA13027597ATC+45069046-45069052, 45072316-45072438, 45073364-45073530
SPROHSA13027797ATC-44827055-44827221, 44828449-44828571, 44831528-44831534
SPROHSA19348196ATG-44827055-44827221, 44828449-44828571, 44830236-44830239