SmProt

Specific Information of Small Protein : SPROHSA246377

General Information

Small Protein ID	SPROHSA246377
Organism	Human (Homo sapiens)
Small Protein Sequence	ISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP*
RNA Sequence	ATTTCGATGCTTGCGTCCAAGTCTGTGAATGTAAAACCCCTCGTCACCCATAGGTTTCCTCTGGAGAAAGCTCTGGAGGCCTTTGAAACATTTAAAAAGGGATTGGGGTTGAAAATCATGCTCAAGTGTGACCCCAGTGACCAGAATCCCTGA
Protein Length	50
Start Codon	ATT
Location	chr15:45073377-45073530:+
Blocks	45073377-45073530
Mean PhyloCSF	6.32296079982
Data Source	Ribosome profiling;
Related Genes	ENSG00000140263; SORD; ENSG00000259352; AC091117.1; NONHSAG016761;
Mass (Da)	mono. 5568; avg. 5571.6

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE119615_1_alt	ENSG00000140263.14	ENST00000267814.14	SORD	Protein_coding	Truncated	0.03477	0.01174	1010	1163	5	112.313085
GSE119615_1_alt	ENSG00000140263.14	ENST00000558580.1	SORD	Protein_coding	Truncated	0.03477	0.033734	964	1117	5	112.313085

Min Ribo P value	0.03477
Min TIS P value	0.01174

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE119615_1_alt	Non-differentiated SH-SY5Y cells	Neuroblastoma	GSM3378857; GSM3378858; GSM3378859; GSM3378860	31109297;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA117403	12	ATC	+	45073491-45073530
SPROHSA387281	16	TTG	-	44827055-44827106
SPROHSA34778	18	AAG	-	44827055-44827112
SPROHSA34779	18	AAG	+	45073473-45073530
SPROHSA288736	26	CTG	-	44827055-44827136
SPROHSA288737	26	CTG	+	45073449-45073530
SPROHSA178714	48	ATG	-	44827055-44827202
SPROHSA60935	55	ACG	+	45072436-45072438, 45073364-45073530
SPROHSA112150	64	ATC	+	45072409-45072438, 45073364-45073530
SPROHSA267355	73	CTG	-	44827055-44827221, 44828449-44828505
SPROHSA147008	79	ATG	-	44827055-44827221, 44828449-44828523
SPROHSA302475	83	CTG	-	44827055-44827221, 44828449-44828535
SPROHSA302476	83	CTG	+	45072352-45072438, 45073364-45073530
SPROHSA356118	85	GTG	-	44827055-44827221, 44828449-44828541
SPROHSA339130	87	GTG	-	44827055-44827221, 44828449-44828547
SPROHSA130275	97	ATC	+	45069046-45069052, 45072316-45072438, 45073364-45073530
SPROHSA130277	97	ATC	-	44827055-44827221, 44828449-44828571, 44831528-44831534
SPROHSA193481	96	ATG	-	44827055-44827221, 44828449-44828571, 44830236-44830239