Specific Information of Small Protein : SPROHSA193481
General Information
Small Protein IDSPROHSA193481
OrganismHuman (Homo sapiens)
Small Protein SequenceMATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP*
RNA SequenceATGGCCACTCGCTCTGGTGGGACCCTCGTGCTTGTGGGGCTGGGCTCTGAGATGACCACCGTACCCCTACTGCATGCAGCCATCCGGGAGGTGGATATCAAGGGCGTGTTTCGATACTGCAACACGTGGCCAGTGGCGATTTCGATGCTTGCGTCCAAGTCTGTGAATGTAAAACCCCTCGTCACCCATAGGTTTCCTCTGGAGAAAGCTCTGGAGGCCTTTGAAACATTTAAAAAGGGATTGGGGTTGAAAATCATGCTCAAGTGTGACCCCAGTGACCAGAATCCCTGA
Protein Length96
Start CodonATG
Locationchr15:44827055-44830239:-
Blocks44827055-44827221,44828449-44828571,44830236-44830239
Mean PhyloCSF-2.35629554385
Data SourceRibosome profiling; Literature;
Related GenesENSG00000259479; SORD2P; ENSG00000259187; AC122108.1; NONHSAG016753;NONHSAG016754;
Mass (Da)mono. 10478.6; avg. 10485.3
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR5512738ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.000201None1984893816.5540125
GSE45833_2ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.000363None198489167.55027726
GSE45833_3ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.027844None1984891012.2164059
GSE45833_6ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.036273None19848942.34876841
GSE45833_6_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.036273None19848942.34876841
SRR4045276ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel2.541E-12None1984897661.8553950
SRR4045276_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel2.541E-12None1984897661.8553950
SRR3208921ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.000205None1984891511.4579517
SRR3208921_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.000205None1984891511.4579517
GSE103308ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel4.569E-09None19848918757.1611529
GSE103308_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel4.569E-09None19848918757.1611529
GSE105082ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel6.397E-12None19848913832.2260006
GSE105082_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel6.397E-12None19848913832.2260006
GSE65778ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.00246None1984897847.0037586
GSE94454ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel7.903E-24None19848944067.3089430
GSE94454_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel7.903E-24None19848944067.3089430
SRR5047771ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel1.255E-09None198489619.58647583
GSE94613_2ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.004803None1984896848.6244350
GSE94613_2_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.004803None1984896848.6244350
GSE94613_1ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.011861None1984891937.7156107
GSE94613_1_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel0.011861None1984891937.7156107
GSE83493ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel5.776E-05None19848912350.6543440
GSE83493_altENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel5.776E-05None19848912350.6543440
SRR2991181ENSG00000259479.6ENST00000564140.5SORD2PTranscribed_unprocessed_pseudogeneNovel5.093E-09None1984895631.4538684
Min Ribo P value7.903E-24
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE103308RD-muscleWTGSM276024729696588;
GSE103308_altRD-muscleWTGSM276024729696588;
GSE105082HELACervical cancerGSM2817679; GSM281768030591072;
GSE105082_altHELACervical cancerGSM2817679; GSM281768030591072;
GSE45833_2BJ cellsQuiescenceGSM1047586; GSM104758723594524;
GSE45833_3BJ cellsPre-senescenceGSM104758823594524;
GSE45833_6BJ cellsTransformedGSM104759123594524;
GSE45833_6_altBJ cellsTransformedGSM104759123594524;
GSE65778HEK293TWTGSM1606107; GSM160610825719440;
GSE83493HeLa S3Cervical cancerGSM2204389; GSM2204390; GSM2204391; GSM220439228460002;
GSE83493_altHeLa S3Cervical cancerGSM2204389; GSM2204390; GSM2204391; GSM220439228460002;
GSE94454Huh7HepatomaGSM2476003; GSM2476004; GSM247600528323820;
GSE94454_altHuh7HepatomaGSM2476003; GSM2476004; GSM247600528323820;
GSE94613_1MOLM13Acute myeloid leukemiaGSM248105229186125;
GSE94613_1_altMOLM13Acute myeloid leukemiaGSM248105229186125;
GSE94613_2MOLM13Acute myeloid leukemiaGSM248105329186125;
GSE94613_2_altMOLM13Acute myeloid leukemiaGSM248105329186125;
SRR2991181SH-SY5YNeuroblastomaGSM197051831109297;
SRR3208921ES cell-derived neurons TSC2-/-Tuberous sclerosis complexGSM208257327655340;
SRR3208921_altES cell-derived neurons TSC2-/-Tuberous sclerosis complexGSM208257327655340;
SRR4045276Meg01 cellsWTGSM228590927681415;
SRR4045276_altMeg01 cellsWTGSM228590927681415;
SRR5047771iPSC-differentiated dopamine neuronsParkinson DiseaseNANA;
SRR5512738GM19147-Lymphoblastoid Cell LineWTGSM260131229950183;

Database information
No results
Literature information
PMID26687005;
Cell lines Or TissuesBJ
PhenotypeNULL
Gene IDENSG00000259479
Transcript IDENST00000564140
SymbolNA
ORF TypesORF
Gene Typepseudogene
ThroughputHigh-throughput Literature Mining
InteractionNA
Function DescriptionNA
Mass Spectrometry Information
MS IDSeqLengthChrStartStopStrand
MSHSA415549SGGTLVLVGLGSEMTTVPLLHAAIR25chr154482848844828562-
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
Gene3DG3DSA:3.90.180.1017961.6E-15T
PANTHERPTHR431611925.7E-31T
PANTHERPTHR43161:SF91925.7E-31T
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA11740312ATC+45073491-45073530
SPROHSA38728116TTG-44827055-44827106
SPROHSA3477818AAG-44827055-44827112
SPROHSA3477918AAG+45073473-45073530
SPROHSA28873626CTG-44827055-44827136
SPROHSA28873726CTG+45073449-45073530
SPROHSA17871448ATG-44827055-44827202
SPROHSA24637750ATT+45073377-45073530
SPROHSA6093555ACG+45072436-45072438, 45073364-45073530
SPROHSA11215064ATC+45072409-45072438, 45073364-45073530
SPROHSA26735573CTG-44827055-44827221, 44828449-44828505
SPROHSA14700879ATG-44827055-44827221, 44828449-44828523
SPROHSA30247583CTG-44827055-44827221, 44828449-44828535
SPROHSA30247683CTG+45072352-45072438, 45073364-45073530
SPROHSA35611885GTG-44827055-44827221, 44828449-44828541
SPROHSA33913087GTG-44827055-44827221, 44828449-44828547