SmProt

Specific Information of Small Protein : SPROHSA178714

General Information

Small Protein ID	SPROHSA178714
Organism	Human (Homo sapiens)
Small Protein Sequence	MLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPSDQNP*
RNA Sequence	ATGCTTGCGTCCAAGTCTGTGAATGTAAAACCCCTCGTCACCCATAGGTTTCCTCTGGAGAAAGCTCTGGAGGCCTTTGAAACATTTAAAAAGGGATTGGGGTTGAAAATCATGCTCAAGTGTGACCCCAGTGACCAGAATCCCTGA
Protein Length	48
Start Codon	ATG
Location	chr15:44827055-44827202:-
Blocks	44827055-44827202
Mean PhyloCSF	-8.28738097107
Data Source	Ribosome profiling;
Related Genes	ENSG00000259479; SORD2P; ENSG00000259187; AC122108.1; NONHSAG016753;NONHSAG016754;
Mass (Da)	mono. 5367.9; avg. 5371.3

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE45833_4	ENSG00000259479.6	ENST00000561384.3	SORD2P	Transcribed_unprocessed_pseudogene	Novel	0.015893	None	1042	1189	5	7.34897161
SRR3208921	ENSG00000259479.6	ENST00000561384.3	SORD2P	Transcribed_unprocessed_pseudogene	Novel	0.004134	None	1042	1189	9	13.6092406
GSE45833_4	ENSG00000259479.6	ENST00000562107.1	SORD2P	Transcribed_unprocessed_pseudogene	Novel	0.015893	None	301	448	5	7.34897161
SRR3208921	ENSG00000259479.6	ENST00000562107.1	SORD2P	Transcribed_unprocessed_pseudogene	Novel	0.004134	None	301	448	9	13.6092406
GSE45833_4	ENSG00000259479.6	ENST00000564140.5	SORD2P	Transcribed_unprocessed_pseudogene	Novel	0.015893	None	342	489	5	7.34897161

Min Ribo P value	0.004134
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE45833_4	BJ cells	Proliferation	GSM1047589	23594524;
SRR3208921	ES cell-derived neurons TSC2-/-	Tuberous sclerosis complex	GSM2082573	27655340;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
Gene3D	G3DSA:3.90.180.10		1	48	2.4E-10	T

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA117403	12	ATC	+	45073491-45073530
SPROHSA387281	16	TTG	-	44827055-44827106
SPROHSA34778	18	AAG	-	44827055-44827112
SPROHSA34779	18	AAG	+	45073473-45073530
SPROHSA288736	26	CTG	-	44827055-44827136
SPROHSA288737	26	CTG	+	45073449-45073530
SPROHSA246377	50	ATT	+	45073377-45073530
SPROHSA60935	55	ACG	+	45072436-45072438, 45073364-45073530
SPROHSA112150	64	ATC	+	45072409-45072438, 45073364-45073530
SPROHSA267355	73	CTG	-	44827055-44827221, 44828449-44828505
SPROHSA147008	79	ATG	-	44827055-44827221, 44828449-44828523
SPROHSA302475	83	CTG	-	44827055-44827221, 44828449-44828535
SPROHSA302476	83	CTG	+	45072352-45072438, 45073364-45073530
SPROHSA356118	85	GTG	-	44827055-44827221, 44828449-44828541
SPROHSA339130	87	GTG	-	44827055-44827221, 44828449-44828547
SPROHSA130275	97	ATC	+	45069046-45069052, 45072316-45072438, 45073364-45073530
SPROHSA130277	97	ATC	-	44827055-44827221, 44828449-44828571, 44831528-44831534
SPROHSA193481	96	ATG	-	44827055-44827221, 44828449-44828571, 44830236-44830239