Specific Information of Small Protein : SPROHSA134339
General Information
| Small Protein ID | SPROHSA134339 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | ICSFLAGVRQGRVIIATPGAEAMASKPEKRVASSVFITL |
| RNA Sequence | ATCTGTTCCTTCCTCGCGGGTGTGAGACAAGGAAGAGTGATCATTGCCACACCAGGAGCTGAAGCCATGGCCTCAAAGCCTGAGAAGAGGGTGGCATCGTCTGTCTTTATCACCCTG |
| Protein Length | 39 |
| Start Codon | ATC |
| Location | chr1:15764639-15765034:+ |
| Blocks | 15764639-15764685,15764963-15765034 |
| Mean PhyloCSF | -0.643837637371 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000162458; FBLIM1; |
| Mass (Da) | mono. 4073.2; avg. 4075.8 |
Ribosome profiling
| Min Ribo P value | 0.015704 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt