Specific Information of Small Protein : SPROHSA277079
General Information
| Small Protein ID | SPROHSA277079 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LLAAARPRVTARSRLSLDTADAGGLGRQFVFSFFIKIIFPACCWIWGNFLFVFYDLYLTERNPLKTSA* |
| RNA Sequence | CTGCTAGCAGCAGCCCGACCACGCGTTACCGCACGCTCGCGCCTTTCCCTTGACACGGCGGACGCCGGAGGATTGGGGCGGCAATTTGTCTTTTCCTTTTTTATTAAAATTATTTTTCCTGCCTGTTGTTGGATTTGGGGAAATTTTTTGTTTGTTTTTTATGATTTGTATTTGACTGAGAGAAACCCACTGAAGACGTCTGCGTGA |
| Protein Length | 68 |
| Start Codon | CTG |
| Location | chr12:46372525-46372732:- |
| Blocks | 46372525-46372732 |
| Mean PhyloCSF | -5.84572922263 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000134294; SLC38A2; ENSG00000258096; AC025031.2; NONHSAG010985;NONHSAG010986; |
| Mass (Da) | mono. 7729.1; avg. 7734 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE81802_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.042773 | 0.001842 | 39 | 246 | NA | NA |
| GSE45785_5_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.007223 | None | 39 | 246 | 299 | 1496.37617 |
| GSE45833_3_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.048244 | None | 39 | 246 | 35 | 60.1082580 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 2.048E-05 | 1.425E-14 | 39 | 246 | 381 | 310.721881 |
| GSE81802_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.042773 | 0.001842 | 41 | 248 | NA | NA |
| GSE81802_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.042773 | 0.010675 | 41 | 248 | NA | NA |
| GSE45785_5_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.007223 | None | 41 | 248 | 299 | 1496.37617 |
| GSE45833_3_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.048244 | None | 41 | 248 | 35 | 60.1082580 |
| GSE45785_5_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.007223 | None | 41 | 248 | 299 | 1496.37617 |
| GSE45833_3_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.048244 | None | 41 | 248 | 35 | 60.1082580 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 2.048E-05 | 1.425E-14 | 41 | 248 | 381 | 310.721881 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 2.048E-05 | 5.86E-06 | 41 | 248 | 381 | 310.721881 |
| Min Ribo P value | 2.048E-05 |
| Min TIS P value | 1.425E-14 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45785_5_alt | BJ cells | Immortalized | GSM1115216 | 23594524; |
| GSE45833_3_alt | BJ cells | Pre-senescence | GSM1047588 | 23594524; |
| GSE81802_alt | CD19+ B cells | WT | GSM2175737 | 29529302; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt