Specific Information of Small Protein : SPROHSA252067
General Information
| Small Protein ID | SPROHSA252067 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LKTSA* |
| RNA Sequence | CTGAAGACGTCTGCGTGA |
| Protein Length | 5 |
| Start Codon | CTG |
| Location | chr12:46372525-46372543:- |
| Blocks | 46372525-46372543 |
| Mean PhyloCSF | -7.17088895374 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000134294; SLC38A2; ENSG00000258096; AC025031.2; NONHSAG010985;NONHSAG010986; |
| Mass (Da) | mono. 518.3; avg. 518.6 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_1_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.000916 | None | 228 | 246 | 116 | 1007.13359 |
| SRR3208921_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.005064 | None | 228 | 246 | 50 | 617.456289 |
| GSE129869_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.031674 | None | 228 | 246 | 24 | 2420.27317 |
| GSE103308_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.009804 | None | 228 | 246 | 562 | 2777.25765 |
| GSE58207_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.00237 | 1.437E-06 | 228 | 246 | 1774 | 10149.8933 |
| GSE94613_1_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.021116 | None | 228 | 246 | 67 | 2150.12065 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.048481 | None | 228 | 246 | 126 | 1456.58785 |
| SRR5350740_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.002209 | None | 228 | 246 | 38 | 775.852846 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.006572 | 2.245E-05 | 228 | 246 | 105 | 984.768168 |
| SRR964946_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.041209 | 0.015915 | 228 | 246 | NA | NA |
| GSE45833_1_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.000916 | None | 230 | 248 | 116 | 1007.13359 |
| GSE45833_1_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.000916 | None | 230 | 248 | 116 | 1007.13359 |
| SRR3208921_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.005064 | None | 230 | 248 | 50 | 617.456289 |
| SRR3208921_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.005064 | None | 230 | 248 | 50 | 617.456289 |
| GSE129869_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.031674 | None | 230 | 248 | 24 | 2420.27317 |
| GSE129869_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.031674 | None | 230 | 248 | 24 | 2420.27317 |
| GSE103308_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.009804 | None | 230 | 248 | 562 | 2777.25765 |
| GSE103308_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.009804 | None | 230 | 248 | 562 | 2777.25765 |
| GSE58207_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.00237 | 1.437E-06 | 230 | 248 | 1774 | 10149.8933 |
| GSE58207_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.00237 | 0.002583 | 230 | 248 | 1774 | 10149.8933 |
| GSE94613_1_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.021116 | None | 230 | 248 | 67 | 2150.12065 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.048481 | None | 230 | 248 | 126 | 1456.58785 |
| GSE94613_1_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.021116 | None | 230 | 248 | 67 | 2150.12065 |
| GSE94613_2_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.048481 | None | 230 | 248 | 126 | 1456.58785 |
| SRR5350740_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.002209 | None | 230 | 248 | 38 | 775.852846 |
| SRR5350740_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.002209 | None | 230 | 248 | 38 | 775.852846 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.006572 | 2.245E-05 | 230 | 248 | 105 | 984.768168 |
| SRR618770,618771,618772,618773_alt | ENSG00000134294.14 | ENST00000553252.1 | SLC38A2 | Protein_coding | Novel | 0.006572 | 0.010236 | 230 | 248 | 105 | 984.768168 |
| SRR964946_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.041209 | 0.015915 | 230 | 248 | NA | NA |
| Min Ribo P value | 0.000916 |
| Min TIS P value | 1.437E-06 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE103308_alt | RD-muscle | WT | GSM2760247 | 29696588; |
| GSE129869_alt | Foreskin Fibroblasts | WT | GSM3723750; GSM3723751; GSM3723752 | 31167946; |
| GSE45833_1_alt | BJ cells | Proliferation | GSM1047584; GSM1047585 | 23594524; |
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| GSE94613_1_alt | MOLM13 | Acute myeloid leukemia | GSM2481052 | 29186125; |
| GSE94613_2_alt | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| SRR3208921_alt | ES cell-derived neurons TSC2-/- | Tuberous sclerosis complex | GSM2082573 | 27655340; |
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt