Specific Information of Small Protein : SPROHSA247722
General Information
| Small Protein ID | SPROHSA247722 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IWGNFLFVFYDLYLTERNPLKTSA* |
| RNA Sequence | ATTTGGGGAAATTTTTTGTTTGTTTTTTATGATTTGTATTTGACTGAGAGAAACCCACTGAAGACGTCTGCGTGA |
| Protein Length | 24 |
| Start Codon | ATT |
| Location | chr12:46372525-46372600:- |
| Blocks | 46372525-46372600 |
| Mean PhyloCSF | -7.76741337458 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000134294; SLC38A2; ENSG00000258096; AC025031.2; NONHSAG010985;NONHSAG010986; |
| Mass (Da) | mono. 2906.5; avg. 2908.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR964946_alt | ENSG00000134294.14 | ENST00000549258.5 | SLC38A2 | Protein_coding | 5'UTR | 0.031744 | 0.038754 | 171 | 246 | NA | NA |
| SRR964946_alt | ENSG00000134294.14 | ENST00000256689.10 | SLC38A2 | Protein_coding | 5'UTR | 0.031744 | 0.038754 | 173 | 248 | NA | NA |
| Min Ribo P value | 0.031744 |
| Min TIS P value | 0.038754 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt