Specific Information of Small Protein : SPROMMU77466
General Information
Small Protein IDSPROMMU77466
OrganismMouse (Mus musculus)
Small Protein SequenceIYDNFGIVEGLIAMVYAITATQKTVDGPSGKLWRDGCGATQNIIPASTGAAKTWGKAIPELNGHGLPCSYPRCIRCI*
RNA SequenceATCTATGACAACTTTGGCATTGTGGAAGGGCTCATAGCCATGGTCTATGCTATCACTGCCACTCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGCTGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGACTTGGGGCAAGGCCATCCCAGAGCTGAACGGGCATGGCCTTCCATGTTCCTACCCCCGTTGTATCCGTTGTATCTGA
Protein Length77
Start CodonATC
Locationchr1:11223793-11224027:-
Blocks11223793-11224027
Mean PhyloCSF-0.0931666692098
Data SourceRibosome profiling;
Related GenesENSMUSG00000048960; Prex2; ENSMUSG00000101827; Gm28686; NONMMUG000100;
Mass (Da)mono. 8147.1; avg. 8152.3
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
GSE89011_altENSMUSG00000101827.1ENSMUST00000187404.1Gm28686Processed_pseudogeneNovel0.036086None14738150.95718783
Min Ribo P value0.036086
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
GSE89011_altRF8-embryonic stem cell WTGSM2357212; GSM235721428003464;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROMMU13040364ATG-11223793-11223988
SPROMMU15260371ATT-11223793-11224009
SPROMMU23601981TTG-11223793-11224039
SPROMMU16431689CTG-11223793-11224063