Small Protein ID | SPROMMU236019 | ||
Organism | Mouse (Mus musculus) | ||
Small Protein Sequence | LAKVIYDNFGIVEGLIAMVYAITATQKTVDGPSGKLWRDGCGATQNIIPASTGAAKTWGKAIPELNGHGLPCSYPRCIRCI* | ||
RNA Sequence | TTGGCCAAGGTCATCTATGACAACTTTGGCATTGTGGAAGGGCTCATAGCCATGGTCTATGCTATCACTGCCACTCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGCTGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGACTTGGGGCAAGGCCATCCCAGAGCTGAACGGGCATGGCCTTCCATGTTCCTACCCCCGTTGTATCCGTTGTATCTGA | ||
Protein Length | 81 | ||
Start Codon | TTG | ||
Location | chr1:11223793-11224039:- | ||
Blocks | 11223793-11224039 | ||
Mean PhyloCSF | -0.0886219536386 | ||
Data Source | Ribosome profiling; | ||
Related Genes | ENSMUSG00000048960; Prex2; ENSMUSG00000101827; Gm28686; NONMMUG000100; | ||
Mass (Da) | mono. 8558.4; avg. 8563.9 |
Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
---|---|---|---|---|---|---|---|---|---|---|---|
GSE60095_alt | ENSMUSG00000101827.1 | ENSMUST00000187404.1 | Gm28686 | Processed_pseudogene | Novel | 0.005343 | None | 135 | 381 | 21 | 2.91478630 |
Min Ribo P value | 0.005343 |
Min TIS P value | None |
Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
---|---|---|---|---|
GSE60095_alt | ES cell | WT | GSM1464901 | 25159147; |
No results |
No results |
No results |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|---|---|---|---|---|---|---|---|---|---|
Gene3D | G3DSA:3.30.360.10 | 1 | 76 | 1.2E-26 | T | |||||
Pfam | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 1 | 67 | 5.8E-20 | T | IPR020829 | Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain | GO:0016620|GO:0055114 | Reactome: R-HSA-70171|Reactome: R-HSA-70263 |
PANTHER | PTHR10836 | 1 | 68 | 8.5E-36 | T | IPR020831 | Glyceraldehyde/Erythrose phosphate dehydrogenase family | GO:0016620|GO:0055114 | Reactome: R-HSA-70171|Reactome: R-HSA-70263 | |
SUPERFAMILY | SSF55347 | 1 | 68 | 8.96E-25 | T | |||||
PANTHER | PTHR10836:SF100 | 1 | 68 | 8.5E-36 | T |
SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
---|---|---|---|---|
SPROMMU130403 | 64 | ATG | - | 11223793-11223988 |
SPROMMU152603 | 71 | ATT | - | 11223793-11224009 |
SPROMMU77466 | 77 | ATC | - | 11223793-11224027 |
SPROMMU164316 | 89 | CTG | - | 11223793-11224063 |