SmProt

Specific Information of Small Protein : SPROMMU164316

General Information

Small Protein ID	SPROMMU164316
Organism	Mouse (Mus musculus)
Small Protein Sequence	LHNNCLAPLAKVIYDNFGIVEGLIAMVYAITATQKTVDGPSGKLWRDGCGATQNIIPASTGAAKTWGKAIPELNGHGLPCSYPRCIRCI*
RNA Sequence	CTGCACAACAACTGCTTAGCCCCCTTGGCCAAGGTCATCTATGACAACTTTGGCATTGTGGAAGGGCTCATAGCCATGGTCTATGCTATCACTGCCACTCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGCTGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGACTTGGGGCAAGGCCATCCCAGAGCTGAACGGGCATGGCCTTCCATGTTCCTACCCCCGTTGTATCCGTTGTATCTGA
Protein Length	89
Start Codon	CTG
Location	chr1:11223793-11224063:-
Blocks	11223793-11224063
Mean PhyloCSF	-0.0807444466485
Data Source	Ribosome profiling;
Related Genes	ENSMUSG00000048960; Prex2; ENSMUSG00000101827; Gm28686; NONMMUG000100;
Mass (Da)	mono. 9420.8; avg. 9426.9

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE89184_1_alt	ENSMUSG00000101827.1	ENSMUST00000187404.1	Gm28686	Processed_pseudogene	Novel	0.003815	None	111	381	5	3.89559035

Min Ribo P value	0.003815
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE89184_1_alt	C57Bl/6J-Bone Marrow Macrophages	WT	GSM2360198	28383283;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
PANTHER	PTHR10836:SF100		3	76	1.5E-40	T
PANTHER	PTHR10836		3	76	1.5E-40	T	IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263
Pfam	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	6	75	6.5E-22	T	IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263
Gene3D	G3DSA:3.30.360.10		2	84	7.5E-31	T
SUPERFAMILY	SSF55347		3	76	2.86E-29	T

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROMMU130403	64	ATG	-	11223793-11223988
SPROMMU152603	71	ATT	-	11223793-11224009
SPROMMU77466	77	ATC	-	11223793-11224027
SPROMMU236019	81	TTG	-	11223793-11224039