SmProt

Specific Information of Small Protein : SPROMMU152603

General Information

Small Protein ID	SPROMMU152603
Organism	Mouse (Mus musculus)
Small Protein Sequence	IVEGLIAMVYAITATQKTVDGPSGKLWRDGCGATQNIIPASTGAAKTWGKAIPELNGHGLPCSYPRCIRCI*
RNA Sequence	ATTGTGGAAGGGCTCATAGCCATGGTCTATGCTATCACTGCCACTCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGCTGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGACTTGGGGCAAGGCCATCCCAGAGCTGAACGGGCATGGCCTTCCATGTTCCTACCCCCGTTGTATCCGTTGTATCTGA
Protein Length	71
Start Codon	ATT
Location	chr1:11223793-11224009:-
Blocks	11223793-11224009
Mean PhyloCSF	-0.100930558311
Data Source	Ribosome profiling;
Related Genes	ENSMUSG00000048960; Prex2; ENSMUSG00000101827; Gm28686; NONMMUG000100;
Mass (Da)	mono. 7437.8; avg. 7442.6

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE99585_alt	ENSMUSG00000101827.1	ENSMUST00000187404.1	Gm28686	Processed_pseudogene	Novel	0.000774	None	165	381	24	2.67096964

Min Ribo P value	0.000774
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE99585_alt	C57BL/6-Quadriceps muscle	WT	GSM2648077; GSM2648078	28615380;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
PANTHER	PTHR10836:SF100		1	58	1.3E-28	T
SUPERFAMILY	SSF55347		1	58	4.5E-20	T
Pfam	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	1	57	3.7E-15	T	IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263
PANTHER	PTHR10836		1	58	1.3E-28	T	IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263
Gene3D	G3DSA:3.30.360.10		1	66	1.1E-21	T

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROMMU130403	64	ATG	-	11223793-11223988
SPROMMU77466	77	ATC	-	11223793-11224027
SPROMMU236019	81	TTG	-	11223793-11224039
SPROMMU164316	89	CTG	-	11223793-11224063