SmProt

Specific Information of Small Protein : SPROMMU130403

General Information

Small Protein ID	SPROMMU130403
Organism	Mouse (Mus musculus)
Small Protein Sequence	MVYAITATQKTVDGPSGKLWRDGCGATQNIIPASTGAAKTWGKAIPELNGHGLPCSYPRCIRCI*
RNA Sequence	ATGGTCTATGCTATCACTGCCACTCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGCTGTGGGGCTACCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGACTTGGGGCAAGGCCATCCCAGAGCTGAACGGGCATGGCCTTCCATGTTCCTACCCCCGTTGTATCCGTTGTATCTGA
Protein Length	64
Start Codon	ATG
Location	chr1:11223793-11223988:-
Blocks	11223793-11223988
Mean PhyloCSF	-0.111799999384
Data Source	Ribosome profiling;
Related Genes	ENSMUSG00000048960; Prex2; ENSMUSG00000101827; Gm28686; NONMMUG000100;
Mass (Da)	mono. 6742.4; avg. 6746.8

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE60095	ENSMUSG00000101827.1	ENSMUST00000187404.1	Gm28686	Processed_pseudogene	Novel	0.035896	None	186	381	3	0.52530214
GSE99585	ENSMUSG00000101827.1	ENSMUST00000187404.1	Gm28686	Processed_pseudogene	Novel	0.005994	None	186	381	9	1.10947969

Min Ribo P value	0.005994
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE60095	ES cell	WT	GSM1464901	25159147;
GSE99585	C57BL/6-Quadriceps muscle	WT	GSM2648077; GSM2648078	28615380;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
Gene3D	G3DSA:3.30.360.10		1	60	1.8E-19	T
SUPERFAMILY	SSF55347		2	51	6.55E-18	T
PANTHER	PTHR10836:SF97		2	51	1.9E-25	T
PANTHER	PTHR10836		2	51	1.9E-25	T	IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263
Pfam	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	1	50	8.9E-13	T	IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	GO:0016620\|GO:0055114	Reactome: R-HSA-70171\|Reactome: R-HSA-70263

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROMMU152603	71	ATT	-	11223793-11224009
SPROMMU77466	77	ATC	-	11223793-11224027
SPROMMU236019	81	TTG	-	11223793-11224039
SPROMMU164316	89	CTG	-	11223793-11224063