Specific Information of Small Protein : SPROHSA384591
General Information
| Small Protein ID | SPROHSA384591 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LATHFPSEDILLVTASPVMKAVTNFKQISKILEEFDVEEQSSTMLEKRFPNIKVIESGVKQLKSEEHCIVTEDGNQHVYKKLCVLELNQS* |
| RNA Sequence | TTGGCTACTCACTTTCCATCAGAAGATATTCTCTTGGTAACAGCTTCTCCTGTTATGAAAGCAGTTACAAATTTCAAGCAGATTTCTAAAATATTGGAAGAATTTGATGTTGAAGAACAATCAAGTACCATGTTAGAAAAACGCTTTCCCAACATCAAGGTTATAGAATCTGGCGTAAAGCAACTGAAGAGTGAAGAACACTGCATTGTAACAGAAGATGGCAATCAGCATGTATATAAGAAACTCTGTGTGCTGGAGCTAAACCAAAGTTGA |
| Protein Length | 90 |
| Start Codon | TTG |
| Location | chr11:106827533-106827806:- |
| Blocks | 106827533-106827806 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000152402; GUCY1A2; ENSG00000213252; AP001282.1; |
| Mass (Da) | mono. 10226.3; avg. 10232.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5512738_alt | ENSG00000213252.3 | ENST00000531301.1 | AP001282.1 | Processed_pseudogene | Novel | 0.035768 | None | 84 | 357 | 11 | 5.10790381 |
| GSE103308_alt | ENSG00000213252.3 | ENST00000531301.1 | AP001282.1 | Processed_pseudogene | Novel | 0.034085 | None | 84 | 357 | 10 | 3.25828985 |
| SRR5350744_alt | ENSG00000213252.3 | ENST00000531301.1 | AP001282.1 | Processed_pseudogene | Novel | 0.007826 | None | 84 | 357 | 22 | 31.3594289 |
| Min Ribo P value | 0.007826 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE103308_alt | RD-muscle | WT | GSM2760247 | 29696588; |
| SRR5350744_alt | PC9 | NSCLC | GSM2538903 | 28388414; |
| SRR5512738_alt | GM19147-Lymphoblastoid Cell Line | WT | GSM2601312 | 29950183; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| PANTHER | PTHR43429:SF2 | | 1 | 84 | 7.7E-32 | T | | | | |
| PANTHER | PTHR43429 | | 1 | 84 | 7.7E-32 | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 11-106827786-T-C | Synonymous p.S7S | . | SRR5239056; SRR5239058; SRR5350740; SRR5350744; SRR5350745; SRR8310198; SRR810101; SRR810102; SRR810104 |
Related Small Proteins with Different TISs
SmProt