Specific Information of Small Protein : SPROHSA137529
General Information
| Small Protein ID | SPROHSA137529 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKAVTNFKQISKILEEFDVEEQSSTMLEKRFPNIKVIESGVKQLKSEEHCIVTEDGNQHVYKKLCVLELNQS* |
| RNA Sequence | ATGAAAGCAGTTACAAATTTCAAGCAGATTTCTAAAATATTGGAAGAATTTGATGTTGAAGAACAATCAAGTACCATGTTAGAAAAACGCTTTCCCAACATCAAGGTTATAGAATCTGGCGTAAAGCAACTGAAGAGTGAAGAACACTGCATTGTAACAGAAGATGGCAATCAGCATGTATATAAGAAACTCTGTGTGCTGGAGCTAAACCAAAGTTGA |
| Protein Length | 72 |
| Start Codon | ATG |
| Location | chr11:106827533-106827752:- |
| Blocks | 106827533-106827752 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000152402; GUCY1A2; ENSG00000213252; AP001282.1; |
| Mass (Da) | mono. 8335.3; avg. 8340.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_2 | ENSG00000213252.3 | ENST00000531301.1 | AP001282.1 | Processed_pseudogene | Novel | 0.048753 | None | 138 | 357 | 9 | 5.64331511 |
| GSE94454 | ENSG00000213252.3 | ENST00000531301.1 | AP001282.1 | Processed_pseudogene | Novel | 0.001757 | None | 138 | 357 | 34 | 6.91111127 |
| Min Ribo P value | 0.001757 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE45833_2 | BJ cells | Quiescence | GSM1047586; GSM1047587 | 23594524; |
| GSE94454 | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| PANTHER | PTHR43429 | | 1 | 66 | 1.3E-23 | T | | | | |
| PANTHER | PTHR43429:SF2 | | 1 | 66 | 1.3E-23 | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt