Specific Information of Small Protein : SPROHSA366005
General Information
| Small Protein ID | SPROHSA366005 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VFALRGEGMCDHFQRLTCIPQIVWMSYNLNLQTQYSQTLGSDSLQASCTSPRKRACFPLDM* |
| RNA Sequence | GTGTTCGCTCTAAGGGGAGAAGGAATGTGTGACCATTTCCAACGGTTAACTTGCATTCCCCAGATAGTTTGGATGAGTTACAACCTAAATCTGCAAACTCAATACAGCCAGACCCTGGGAAGTGACTCTCTCCAAGCCTCCTGTACAAGTCCCAGGAAAAGAGCCTGTTTTCCCTTGGACATGTGA |
| Protein Length | 61 |
| Start Codon | GTG |
| Location | chrX:46545583-46546607:+ |
| Blocks | 46545583-46545627,46546465-46546607 |
| Mean PhyloCSF | -8.34965056758 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000230844; ZNF674-AS1; NONHSAG054360; |
| Mass (Da) | mono. 6954.3; avg. 6959 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE45833_2_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.03584 | None | 146 | 332 | 3 | 2.21484948 |
| GSE58207_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.00072 | 0.017962 | 146 | 332 | 34 | 18.8254922 |
| GSE104033_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.005564 | None | 146 | 332 | 10 | 27.1966989 |
| SRR618770,618771,618772,618773_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 5.4E-05 | 0.025107 | 146 | 332 | 20 | 18.1524086 |
| GSE97140_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.005564 | None | 146 | 332 | 10 | 27.1935213 |
| GSE45833_2_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.03584 | None | 91 | 277 | 3 | 2.21484948 |
| GSE58207_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.00072 | 0.017962 | 91 | 277 | 34 | 18.8254922 |
| GSE104033_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.005564 | None | 91 | 277 | 10 | 27.1966989 |
| SRR618770,618771,618772,618773_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 5.4E-05 | 0.025107 | 91 | 277 | 20 | 18.1524086 |
| GSE97140_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.005564 | None | 91 | 277 | 10 | 27.1935213 |
| Min Ribo P value | 5.4E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE104033_alt | HAP-1 cells | Chronic myeloid leukemia | GSM2788007; GSM2788008 | 30143613; |
| GSE45833_2_alt | BJ cells | Quiescence | GSM1047586; GSM1047587 | 23594524; |
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| GSE97140_alt | Flp-In T-REx-293 | WT | GSM2552194; GSM2552195 | 28520920; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt