Specific Information of Small Protein : SPROHSA221227
General Information
| Small Protein ID | SPROHSA221227 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MCDHFQRLTCIPQIVWMSYNLNLQTQYSQTLGSDSLQASCTSPRKRACFPLDM* |
| RNA Sequence | ATGTGTGACCATTTCCAACGGTTAACTTGCATTCCCCAGATAGTTTGGATGAGTTACAACCTAAATCTGCAAACTCAATACAGCCAGACCCTGGGAAGTGACTCTCTCCAAGCCTCCTGTACAAGTCCCAGGAAAAGAGCCTGTTTTCCCTTGGACATGTGA |
| Protein Length | 53 |
| Start Codon | ATG |
| Location | chrX:46545607-46546607:+ |
| Blocks | 46545607-46545627,46546465-46546607 |
| Mean PhyloCSF | -8.32965434922 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000230844; ZNF674-AS1; NONHSAG054360; |
| Mass (Da) | mono. 6124.9; avg. 6129 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE58207_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.010947 | 0.017962 | 115 | 277 | 13 | 8.26435007 |
| SRR618770,618771,618772,618773_alt | ENSG00000230844.3 | ENST00000421685.2 | ZNF674-AS1 | LncRNA | Novel | 0.000126 | 0.025107 | 115 | 277 | 18 | 18.7574889 |
| GSE58207_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.010947 | 0.017962 | 170 | 332 | 13 | 8.26435007 |
| SRR618770,618771,618772,618773_alt | ENSG00000230844.3 | ENST00000657382.1 | ZNF674-AS1 | LncRNA | Novel | 0.000126 | 0.025107 | 170 | 332 | 18 | 18.7574889 |
| Min Ribo P value | 0.000126 |
| Min TIS P value | 0.017962 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt