Specific Information of Small Protein : SPROHSA3553
General Information
| Small Protein ID | SPROHSA3553 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KKSIPSGMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | AAGAAGAGTATACCCAGCGGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 41 |
| Start Codon | AAG |
| Location | chr10:95876554-95907682:- |
| Blocks | 95876554-95876660,95907662-95907682 |
| Mean PhyloCSF | -8.05121431653 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 4582.3; avg. 4585.2 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE105082_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003302 | None | 219 | 345 | 16 | 8.62918443 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003483 | 0.040878 | 219 | 345 | 17 | 13.8950061 |
| GSE105082_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003302 | None | 456 | 582 | 16 | 8.62918443 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.003483 | 0.040878 | 456 | 582 | 17 | 13.8950061 |
| Min Ribo P value | 0.003302 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt