Specific Information of Small Protein : SPROHSA319973
General Information
| Small Protein ID | SPROHSA319973 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VKKKSIPSGMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | GTGAAGAAGAAGAGTATACCCAGCGGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 43 |
| Start Codon | GTG |
| Location | chr10:95876554-95907688:- |
| Blocks | 95876554-95876660,95907662-95907688 |
| Mean PhyloCSF | -7.94015912215 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 4809.4; avg. 4812.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR7207252_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.011815 | None | 213 | 345 | 8 | 16.0274938 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 8.229E-05 | 0.025107 | 213 | 345 | 27 | 34.5308318 |
| SRR964946_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.013387 | 0.007775 | 213 | 345 | NA | NA |
| SRR7207252_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.011815 | None | 450 | 582 | 8 | 16.0274938 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 8.229E-05 | 0.025107 | 450 | 582 | 27 | 34.5308318 |
| SRR964946_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.013387 | 0.007775 | 450 | 582 | NA | NA |
| Min Ribo P value | 8.229E-05 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt