Specific Information of Small Protein : SPROHSA307266
General Information
| Small Protein ID | SPROHSA307266 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | LVKKKSIPSGMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | CTGGTGAAGAAGAAGAGTATACCCAGCGGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 44 |
| Start Codon | CTG |
| Location | chr10:95876554-95907691:- |
| Blocks | 95876554-95876660,95907662-95907691 |
| Mean PhyloCSF | -7.91971114123 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 4922.5; avg. 4925.7 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE58207_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000328 | 2.721E-05 | 210 | 345 | 30 | 22.8858925 |
| SRR5047770_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.008004 | None | 210 | 345 | 13 | 7.64016685 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000188 | 0.002859 | 210 | 345 | 27 | 33.7634800 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000328 | 2.721E-05 | 447 | 582 | 30 | 22.8858925 |
| SRR5047770_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.008004 | None | 447 | 582 | 13 | 7.64016685 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000188 | 0.002859 | 447 | 582 | 27 | 33.7634800 |
| Min Ribo P value | 0.000188 |
| Min TIS P value | 2.721E-05 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt