Specific Information of Small Protein : SPROHSA121927
General Information
| Small Protein ID | SPROHSA121927 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | IPLVLVKKKSIPSGMACPEDSQIHPSNRLHCRRQSGFILYSPCRLPSS* |
| RNA Sequence | ATCCCTCTCGTCCTGGTGAAGAAGAAGAGTATACCCAGCGGAATGGCCTGTCCAGAAGACAGCCAAATACATCCTTCAAACAGACTTCACTGCAGGAGACAGAGTGGATTCATCCTGTATTCTCCATGTAGACTTCCATCTTCATGA |
| Protein Length | 48 |
| Start Codon | ATC |
| Location | chr10:95876554-95907703:- |
| Blocks | 95876554-95876660,95907662-95907703 |
| Mean PhyloCSF | -7.81442860843 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000138185; ENTPD1; ENSG00000226688; ENTPD1-AS1; ENSG00000188649; CC2D2B; ENSG00000270099; AL365273.2; NONHSAG061460;NONHSAG006591; |
| Mass (Da) | mono. 5344.8; avg. 5348.3 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE58207_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000337 | 0.026218 | 198 | 345 | 30 | 21.0176563 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000662079.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000453 | 0.025107 | 198 | 345 | 27 | 31.0072776 |
| GSE58207_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000337 | 0.026218 | 435 | 582 | 30 | 21.0176563 |
| SRR618770,618771,618772,618773_alt | ENSG00000226688.7 | ENST00000655193.1 | ENTPD1-AS1 | LncRNA | Novel | 0.000453 | 0.025107 | 435 | 582 | 27 | 31.0072776 |
| Min Ribo P value | 0.000337 |
| Min TIS P value | 0.025107 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE58207_alt | HCT116 | Colorectal carcinoma | GSM1403307; GSM1403308 | 25510491; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt