Specific Information of Small Protein : SPROHSA252262
General Information
Small Protein IDSPROHSA252262
OrganismHuman (Homo sapiens)
Small Protein SequenceLKMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARL
RNA SequenceCTGAAGATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTTA
Protein Length39
Start CodonCTG
Locationchr14:58285586-58285703:-
Blocks58285586-58285703
Mean PhyloCSF0
Data SourceRibosome profiling;
Related GenesENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; NONHSAG015097;NONHSAG015108;
Mass (Da)mono. 4617.4; avg. 4620.6
Ribosome profiling
Ribo-seq IDEnsembl Gene IDEnsembl Transcript IDSymbolGene TypeTIS TypeRibo P valueTIS P valueStart On TransStop On TransIn-frame CountRibo-seq RPKM
SRR7207252_altENSG00000257621.8ENST00000557412.1PSMA3-AS1LncRNANovel0.034069None437554511.3014379
Min Ribo P value0.034069
Min TIS P valueNone
Ribo-seq IDCell or TissuePhenotypeRibo-seq Source DetailsPMID
SRR7207252_altMCF10A-ER-SrcBreast adenocarcinomaGSM315026530089253;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
Variant IDConsequence to sORFrsIDRibo-seq ID
No results
Related Small Proteins with Different TISs
SmProt IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA13620437ATG-58285586-58285697
SPROHSA1751445AAG-58285586-58285721
SPROHSA24648448ATT-58285586-58285730
SPROHSA23000949ATT-58285586-58285733