Specific Information of Small Protein : SPROHSA17514
General Information
| Small Protein ID | SPROHSA17514 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KPHQRRLKMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARL |
| RNA Sequence | AAGCCACATCAGAGACGACTGAAGATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTTA |
| Protein Length | 45 |
| Start Codon | AAG |
| Location | chr14:58285586-58285721:- |
| Blocks | 58285586-58285721 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 5419.9; avg. 5423.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276_alt | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.003524 | None | 419 | 554 | 6 | 10.5262689 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.003084 | None | 419 | 554 | 15 | 4.94618748 |
| SRR5047770_alt | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.035387 | None | 419 | 554 | 4 | 2.35082057 |
| Min Ribo P value | 0.003084 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE94454_alt | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR5047770_alt | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt