Specific Information of Small Protein : SPROHSA136204
General Information
| Small Protein ID | SPROHSA136204 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARL |
| RNA Sequence | ATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTTA |
| Protein Length | 37 |
| Start Codon | ATG |
| Location | chr14:58285586-58285697:- |
| Blocks | 58285586-58285697 |
| Mean PhyloCSF | 0 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 4376.2; avg. 4379.2 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276 | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.011028 | None | 443 | 554 | 5 | 10.6685158 |
| GSE105082 | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.001027 | None | 443 | 554 | 10 | 6.12205652 |
| GSE83493 | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.011028 | None | 443 | 554 | 4 | 4.31858613 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.011028 | None | 443 | 554 | 4 | 4.31858613 |
| SRR618770,618771,618772,618773_alt | ENSG00000257621.8 | ENST00000557412.1 | PSMA3-AS1 | LncRNA | Novel | 0.030129 | 0.002859 | 443 | 554 | 7 | 10.6461423 |
| Min Ribo P value | 0.001027 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082 | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| SRR4045276 | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
SmProt