Specific Information of Small Protein : SPROHSA187238
General Information
| Small Protein ID | SPROHSA187238 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | MEATAATAAAEASPGGAVAWRGILILGQPPVKRRRSVMPLEDWMNILQEPDEGGHAG* |
| RNA Sequence | ATGGAGGCCACCGCGGCTACGGCCGCGGCTGAGGCCTCCCCAGGTGGAGCGGTGGCCTGGAGGGGAATCTTGATCCTGGGCCAGCCACCTGTCAAGAGGAGGCGGAGCGTCATGCCTCTGGAAGACTGGATGAATATTCTCCAGGAGCCTGACGAAGGCGGCCATGCTGGATAA |
| Protein Length | 57 |
| Start Codon | ATG |
| Location | chr9:120843280-120847308:+ |
| Blocks | 120843280-120843439,120847293-120847308 |
| Mean PhyloCSF | -5.10487932738 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000226752; CUTALP; NONHSAG053338; |
| Mass (Da) | mono. 5978; avg. 5981.8 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5047770 | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.040766 | None | 285 | 459 | 8 | 3.64782502 |
| SRR5047771 | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.042309 | None | 285 | 459 | 39 | 10.2503216 |
| GSE94613_2 | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.032553 | None | 285 | 459 | 15 | 17.9382740 |
| SRR7207252 | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.035757 | None | 285 | 459 | 3 | 4.55954565 |
| SRR7207252_alt | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.035757 | None | 285 | 459 | 3 | 4.55954565 |
| GSE83493 | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.001258 | None | 285 | 459 | 18 | 12.3973205 |
| GSE83493_alt | ENSG00000226752.9 | ENST00000640391.1 | CUTALP | Transcribed_unitary_pseudogene | Novel | 0.001258 | None | 285 | 459 | 18 | 12.3973205 |
| Min Ribo P value | 0.001258 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE94613_2 | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| SRR5047770 | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| SRR7207252 | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA170051 | 20 | ATG | + | 120843391-120843439, 120847293-120847308 |
| SPROHSA80490 | 24 | AGG | + | 120843379-120843439, 120847293-120847308 |
| SPROHSA301125 | 32 | CTG | + | 120843355-120843439, 120847293-120847308 |
| SPROHSA372006 | 34 | TTG | + | 120843349-120843439, 120847293-120847308 |
| SPROHSA55337 | 51 | ACG | + | 120843298-120843439, 120847293-120847308 |
SmProt