SmProt

Specific Information of Small Protein : SPROHSA370546

General Information

Small Protein ID	SPROHSA370546
Organism	Human (Homo sapiens)
Small Protein Sequence	LRNLDLRSVCEWYSVKRTIISYKPHQRRLKMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW*
RNA Sequence	TTGAGAAACCTGGATCTGCGATCTGTTTGTGAGTGGTATTCAGTTAAGAGAACAATTATTTCGTATAAGCCACATCAGAGACGACTGAAGATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA
Protein Length	74
Start Codon	TTG
Location	chr14:58273982-58291665:-
Blocks	58273982-58274010,58285590-58285756,58291634-58291665
Mean PhyloCSF	-2.54636001587
Data Source	Ribosome profiling;
Related Genes	ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810;
Mass (Da)	mono. 9087.7; avg. 9093.6

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
GSE105082_alt	ENSG00000257621.8	ENST00000554360.5	PSMA3-AS1	LncRNA	Novel	3.816E-05	None	217	442	31	9.36266511
SRR5047770_alt	ENSG00000257621.8	ENST00000554360.5	PSMA3-AS1	LncRNA	Novel	0.009825	None	217	442	19	6.69983862
GSE105082_alt	ENSG00000257621.8	ENST00000554378.5	PSMA3-AS1	LncRNA	Novel	3.816E-05	None	222	447	31	9.36266511
SRR5047770_alt	ENSG00000257621.8	ENST00000554378.5	PSMA3-AS1	LncRNA	Novel	0.009825	None	222	447	19	6.69983862

Min Ribo P value	3.816E-05
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
GSE105082_alt	HELA	Cervical cancer	GSM2817679; GSM2817680	30591072;
SRR5047770_alt	iPSC-differentiated dopamine neurons	Parkinson Disease	GSM2402496; GSM2402497; GSM2402498	NA;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA136203	44	ATG	-	58273982-58274010, 58285590-58285697
SPROHSA17513	52	AAG	-	58273982-58274010, 58285590-58285721
SPROHSA200501	83	ATG	-	58273982-58274010, 58285590-58285756, 58291634-58291692