SmProt
SmProt
| Small Protein ID | SPROHSA200501 | ||
| Organism | Human (Homo sapiens) | ||
| Small Protein Sequence | MGKLSRCSSLRNLDLRSVCEWYSVKRTIISYKPHQRRLKMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW* | ||
| RNA Sequence | ATGGGAAAATTAAGCAGATGCTCCAGTTTGAGAAACCTGGATCTGCGATCTGTTTGTGAGTGGTATTCAGTTAAGAGAACAATTATTTCGTATAAGCCACATCAGAGACGACTGAAGATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA | ||
| Protein Length | 83 | ||
| Start Codon | ATG | ||
| Location | chr14:58273982-58291692:- | ||
| Blocks | 58273982-58274010,58285590-58285756,58291634-58291692 | ||
| Mean PhyloCSF | -3.21043651823 | ||
| Data Source | Ribosome profiling; Literature; | ||
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; ENSG00000279636; AL132989.2; NONHSAG015097;NONHSAG015108;NONHSAG068810; | ||
| Mass (Da) | mono. 10037.1; avg. 10043.7 | ||
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GSE105082 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.0011 | None | 190 | 442 | 34 | 9.16850846 |
| GSE94454 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.014958 | None | 190 | 442 | 31 | 5.47613614 |
| SRR5047771 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.002119 | None | 190 | 442 | 50 | 9.07385007 |
| SRR5047770 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.019571 | None | 190 | 442 | 28 | 8.81557713 |
| SRR7207252 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.002535 | None | 190 | 442 | 23 | 24.1366424 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.002535 | None | 190 | 442 | 23 | 24.1366424 |
| GSE83493 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.000949 | None | 190 | 442 | 26 | 12.3645233 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.000949 | None | 190 | 442 | 26 | 12.3645233 |
| SRR618770,618771,618772,618773_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.003696 | 1.613E-06 | 190 | 442 | 19 | 12.7282960 |
| GSE105082 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.0011 | None | 195 | 447 | 34 | 9.16850846 |
| GSE94454 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.014958 | None | 195 | 447 | 31 | 5.47613614 |
| SRR5047771 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.002119 | None | 195 | 447 | 50 | 9.07385007 |
| SRR5047770 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.019571 | None | 195 | 447 | 28 | 8.81557713 |
| SRR7207252 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.002535 | None | 195 | 447 | 23 | 24.1366424 |
| SRR7207252_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.002535 | None | 195 | 447 | 23 | 24.1366424 |
| GSE83493 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.000949 | None | 195 | 447 | 26 | 12.3645233 |
| GSE83493_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.000949 | None | 195 | 447 | 26 | 12.3645233 |
| SRR618770,618771,618772,618773_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.003696 | 0.000413 | 195 | 447 | 19 | 12.7282960 |
| Min Ribo P value | 0.000949 |
| Min TIS P value | 1.613E-06 |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|---|---|---|---|
| GSE105082 | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE83493 | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE83493_alt | HeLa S3 | Cervical cancer | GSM2204389; GSM2204390; GSM2204391; GSM2204392 | 28460002; |
| GSE94454 | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR5047770 | iPSC-differentiated dopamine neurons | Parkinson Disease | GSM2402496; GSM2402497; GSM2402498 | NA; |
| SRR5047771 | iPSC-differentiated dopamine neurons | Parkinson Disease | NA | NA; |
| SRR618770,618771,618772,618773_alt | HEK293 | WT | SRR618770; SRR618771; SRR618772; SRR618773 | NA; |
| SRR7207252 | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| SRR7207252_alt | MCF10A-ER-Src | Breast adenocarcinoma | GSM3150265 | 30089253; |
| No results |
| PMID | 31155234; |
| Cell lines Or Tissues | left ventricle |
| Phenotype | WT |
| Gene ID | ENSG00000257621 |
| Transcript ID | ENST00000554360 |
| Symbol | NA |
| ORF Type | sORF |
| Gene Type | antisense |
| Throughput | High-throughput Literature Mining |
| Interaction | NA |
| Function Description | NA |
| PMID | 26687005; |
| Cell lines Or Tissues | BJ |
| Phenotype | NULL |
| Gene ID | ENSG00000257621 |
| Transcript ID | ENST00000557660 |
| Symbol | RP11-349A22.5 |
| ORF Type | sORF |
| Gene Type | Antisense |
| Throughput | High-throughput Literature Mining |
| Interaction | NA |
| Function Description | NA |
| No results |
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|---|---|---|---|---|---|---|---|---|---|
| No results | ||||||||||
| Disease | Detected | |
|---|---|---|
| No results | ||
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|---|---|---|
| No results | |||
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|---|---|---|---|
| SPROHSA136203 | 44 | ATG | - | 58273982-58274010, 58285590-58285697 |
| SPROHSA17513 | 52 | AAG | - | 58273982-58274010, 58285590-58285721 |
| SPROHSA370546 | 74 | TTG | - | 58273982-58274010, 58285590-58285756, 58291634-58291665 |