Specific Information of Small Protein : SPROHSA136203
General Information
Small Protein ID | SPROHSA136203 |
Organism | human (Homo sapiens) |
Small Protein Sequence | MKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW* |
RNA Sequence | ATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA |
Protein Length | 44 |
Start Codon | ATG |
Location | chr14:58273982-58285697:- |
Blocks | 58273982-58274010,58285590-58285697 |
Mean PhyloCSF | -2.18614075272 |
Data Source | Ribosome profiling; |
Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; NONHSAG015097;NONHSAG015108; |
Ribosome profiling
RiboID | GeneID | TransID | Symbol | GeneType | TISType | RiboPvalue | TISPvalue | StartOnTrans | StopOnTrans |
---|
SRR4045276 | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | lncRNA | Novel | 0.034466 | None | 307 | 442 |
SRR4045276 | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | lncRNA | Novel | 0.034466 | None | 312 | 447 |
Min Ribo Pvalue | 0.034466 |
Min TIS Pvalue | None |
RiboID | CellORTissue | Phenotype | RiboSource | PMID |
---|
SRR4045276 | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
Functional domain prediction |       |
Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
---|
No results |
Disease | Detected |
---|
No results |
Related Variants
VarID | Consequence To sORF | rsID | RiboID |
---|
No results |
Related Small Proteins with Different TISs
ID | Small Protein Length | Start Codon | Strand | Blocks |
---|
SPROHSA17513 | 52 | AAG | - | 58273982-58274010,58285590-58285721 |
SPROHSA370546 | 74 | TTG | - | 58273982-58274010,58285590-58285756,58291634-58291665 |
SPROHSA200501 | 83 | ATG | - | 58273982-58274010,58285590-58285756,58291634-58291692 |
References
PMID | 27681415 |
Title | Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets |
Journal | Cell Rep.2016 Sep 27;17(1):1-10.doi: 10.1016/j.celrep.2016.08.088. |
Authors | Eric W Mills,Jamie Wangen,Rachel Green,Nicholas T Ingolia |