Specific Information of Small Protein : SPROHSA136203
General Information
Small Protein IDSPROHSA136203
Organismhuman (Homo sapiens)
Small Protein SequenceMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW*
RNA SequenceATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA
Protein Length44
Start CodonATG
Locationchr14:58273982-58285697:-
Blocks58273982-58274010,58285590-58285697
Mean PhyloCSF-2.18614075272
Data SourceRibosome profiling;
Related GenesENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; NONHSAG015097;NONHSAG015108;
Ribosome profiling
RiboIDGeneIDTransIDSymbolGeneTypeTISTypeRiboPvalueTISPvalueStartOnTransStopOnTrans
SRR4045276ENSG00000257621.8ENST00000554360.5PSMA3-AS1lncRNANovel0.034466None307442
SRR4045276ENSG00000257621.8ENST00000554378.5PSMA3-AS1lncRNANovel0.034466None312447
Min Ribo Pvalue0.034466
Min TIS PvalueNone
RiboIDCellORTissuePhenotypeRiboSourcePMID
SRR4045276Meg01 cellsWTGSM228590927681415;

Database information
No results
Literature information
No results
Mass Spectrometry Information
No results
Function and Disease
Functional domain prediction Funtion   
AnalysisSignature AccessionSignature DescriptionStart locationStop locationScoreStatus of the matchInterPro accessionInterPro descriptionGOPathways
No results
DiseaseDetected
No results
Related Variants
VarIDConsequence To sORFrsIDRiboID
No results
Related Small Proteins with Different TISs
IDSmall Protein LengthStart CodonStrandBlocks
SPROHSA1751352AAG-58273982-58274010,58285590-58285721
SPROHSA37054674TTG-58273982-58274010,58285590-58285756,58291634-58291665
SPROHSA20050183ATG-58273982-58274010,58285590-58285756,58291634-58291692
References
PMID27681415
TitleDynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets
JournalCell Rep.2016 Sep 27;17(1):1-10.doi: 10.1016/j.celrep.2016.08.088.
AuthorsEric W Mills,Jamie Wangen,Rachel Green,Nicholas T Ingolia