SmProt

Specific Information of Small Protein : SPROHSA136203

General Information

Small Protein ID	SPROHSA136203
Organism	Human (Homo sapiens)
Small Protein Sequence	MKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW*
RNA Sequence	ATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA
Protein Length	44
Start Codon	ATG
Location	chr14:58273982-58285697:-
Blocks	58273982-58274010,58285590-58285697
Mean PhyloCSF	-2.18614075272
Data Source	Ribosome profiling;
Related Genes	ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; NONHSAG015097;NONHSAG015108;
Mass (Da)	mono. 5348.6; avg. 5352.2

Ribosome profiling

Ribo-seq ID	Ensembl Gene ID	Ensembl Transcript ID	Symbol	Gene Type	TIS Type	Ribo P value	TIS P value	Start On Trans	Stop On Trans	In-frame Count	Ribo-seq RPKM
SRR4045276	ENSG00000257621.8	ENST00000554360.5	PSMA3-AS1	LncRNA	Novel	0.034466	None	307	442	5	8.77189081
SRR4045276	ENSG00000257621.8	ENST00000554378.5	PSMA3-AS1	LncRNA	Novel	0.034466	None	312	447	5	8.77189081

Min Ribo P value	0.034466
Min TIS P value	None

Ribo-seq ID	Cell or Tissue	Phenotype	Ribo-seq Source Details	PMID
SRR4045276	Meg01 cells	WT	GSM2285909	27681415;

Database information

No results

Literature information

No results

Mass Spectrometry Information

No results

Function and Disease

Functional domain prediction

Analysis	Signature Accession	Signature Description	Start location	Stop location	Score	Status of the match	InterPro accession	InterPro description	GO	Pathways
No results

Disease	Detected
No results

Related Variants

Variant ID	Consequence to sORF	rsID	Ribo-seq ID
No results

Related Small Proteins with Different TISs

SmProt ID	Small Protein Length	Start Codon	Strand	Blocks
SPROHSA17513	52	AAG	-	58273982-58274010, 58285590-58285721
SPROHSA370546	74	TTG	-	58273982-58274010, 58285590-58285756, 58291634-58291665
SPROHSA200501	83	ATG	-	58273982-58274010, 58285590-58285756, 58291634-58291692