Specific Information of Small Protein : SPROHSA17513
General Information
| Small Protein ID | SPROHSA17513 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | KPHQRRLKMKKLPSPYITNLCCAPTRTCFKFPWQFTTPILYQARYQHQDDLW* |
| RNA Sequence | AAGCCACATCAGAGACGACTGAAGATGAAAAAACTACCATCCCCGTATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGGCAATTTACAACCCCCATACTGTACCAGGCAAGGTACCAGCATCAAGATGATTTATGGTAA |
| Protein Length | 52 |
| Start Codon | AAG |
| Location | chr14:58273982-58285721:- |
| Blocks | 58273982-58274010,58285590-58285721 |
| Mean PhyloCSF | -1.85615724288 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000139971; ARMH4; ENSG00000257621; PSMA3-AS1; ENSG00000180189; HMGB1P14; NONHSAG015097;NONHSAG015108; |
| Mass (Da) | mono. 6392.3; avg. 6396.5 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR4045276_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.013552 | None | 283 | 442 | 6 | 8.93739818 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000554360.5 | PSMA3-AS1 | LncRNA | Novel | 0.00211 | None | 283 | 442 | 20 | 5.59945752 |
| SRR4045276_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.013552 | None | 288 | 447 | 6 | 8.93739818 |
| GSE94454_alt | ENSG00000257621.8 | ENST00000554378.5 | PSMA3-AS1 | LncRNA | Novel | 0.00211 | None | 288 | 447 | 20 | 5.59945752 |
| Min Ribo P value | 0.00211 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE94454_alt | Huh7 | Hepatoma | GSM2476003; GSM2476004; GSM2476005 | 28323820; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| No results |
Related Small Proteins with Different TISs
| SmProt ID | Small Protein Length | Start Codon | Strand | Blocks |
|---|
| SPROHSA136203 | 44 | ATG | - | 58273982-58274010, 58285590-58285697 |
| SPROHSA370546 | 74 | TTG | - | 58273982-58274010, 58285590-58285756, 58291634-58291665 |
| SPROHSA200501 | 83 | ATG | - | 58273982-58274010, 58285590-58285756, 58291634-58291692 |
SmProt