Specific Information of Small Protein : SPROHSA360886
General Information
| Small Protein ID | SPROHSA360886 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | VSSGRSPISAAITTEPGPPTQVQGQPP* |
| RNA Sequence | GTGTCAAGCGGGCGCTCCCCCATCTCCGCCGCTATTACCACTGAACCCGGACCCCCTACCCAGGTCCAGGGCCAGCCGCCATGA |
| Protein Length | 27 |
| Start Codon | GTG |
| Location | chr1:109090792-109090876:+ |
| Blocks | 109090792-109090876 |
| Mean PhyloCSF | -2.48228569036 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000273382; AL356488.3; ENSG00000215717; TMEM167B; NONHSAG002324; |
| Mass (Da) | mono. 2658.4; avg. 2659.9 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| SRR5512738_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.004324 | None | 13 | 97 | 17 | 25.6556077 |
| SRR4045276_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.000131 | None | 13 | 97 | 18 | 50.7516539 |
| GSE45785_3_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.004686 | None | 13 | 97 | 43 | 215.893184 |
| GSE45785_5_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.023797 | None | 13 | 97 | 20 | 246.655414 |
| GSE45833_4_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.043836 | None | 13 | 97 | 7 | 18.0049804 |
| GSE105082_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.01221 | None | 13 | 97 | 6 | 4.85391624 |
| SRR964946_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.026892 | 0.010128 | 13 | 97 | NA | NA |
| SRR5512738_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.002837 | None | 20 | 104 | 26 | 39.2379883 |
| SRR4045276_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.000896 | None | 20 | 104 | 23 | 64.8493356 |
| GSE45833_3_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.034381 | None | 20 | 104 | 35 | 148.123921 |
| SRR964946_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.03064 | 0.003579 | 20 | 104 | NA | NA |
| SRR5512738_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.002837 | None | 990 | 1074 | 26 | 39.2379883 |
| SRR4045276_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.000896 | None | 990 | 1074 | 23 | 64.8493356 |
| GSE45833_3_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.034381 | None | 990 | 1074 | 35 | 148.123921 |
| SRR964946_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.03064 | 0.003579 | 990 | 1074 | NA | NA |
| Min Ribo P value | 0.000131 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE105082_alt | HELA | Cervical cancer | GSM2817679; GSM2817680 | 30591072; |
| GSE45785_3_alt | BJ cells | Immortalized | GSM1115210 | 23594524; |
| GSE45785_5_alt | BJ cells | Immortalized | GSM1115216 | 23594524; |
| GSE45833_3_alt | BJ cells | Pre-senescence | GSM1047588 | 23594524; |
| GSE45833_4_alt | BJ cells | Proliferation | GSM1047589 | 23594524; |
| SRR4045276_alt | Meg01 cells | WT | GSM2285909 | 27681415; |
| SRR5512738_alt | GM19147-Lymphoblastoid Cell Line | WT | GSM2601312 | 29950183; |
| SRR964946_alt | HEK293 | WT | SRR964946 | 22927429; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | T | | | | |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | T | | | | |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 1-109090871-C-T | Non-Synonymous p.P27S | . | SRR5239058 |
Related Small Proteins with Different TISs
SmProt