Specific Information of Small Protein : SPROHSA228278
General Information
| Small Protein ID | SPROHSA228278 |
| Organism | Human (Homo sapiens) |
| Small Protein Sequence | ITTEPGPPTQVQGQPP* |
| RNA Sequence | ATTACCACTGAACCCGGACCCCCTACCCAGGTCCAGGGCCAGCCGCCATGA |
| Protein Length | 16 |
| Start Codon | ATT |
| Location | chr1:109090825-109090876:+ |
| Blocks | 109090825-109090876 |
| Mean PhyloCSF | -3.83388231125 |
| Data Source | Ribosome profiling; |
| Related Genes | ENSG00000273382; AL356488.3; ENSG00000215717; TMEM167B; NONHSAG002324; |
| Mass (Da) | mono. 1645.8; avg. 1646.8 |
Ribosome profiling
| Ribo-seq ID | Ensembl Gene ID | Ensembl Transcript ID | Symbol | Gene Type | TIS Type | Ribo P value | TIS P value | Start On Trans | Stop On Trans | In-frame Count | Ribo-seq RPKM |
|---|
| GSE104033_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.02522 | None | 1023 | 1074 | 6 | 59.5127766 |
| SRR5350740_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.011692 | None | 1023 | 1074 | 11 | 79.2666994 |
| GSE97140_alt | ENSG00000215717.6 | ENST00000338272.8 | TMEM167B | Protein_coding | 5'UTR | 0.02522 | None | 1023 | 1074 | 6 | 59.5058231 |
| GSE94613_2_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.020628 | None | 20 | 71 | 44 | 179.523433 |
| GSE104033_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.02522 | None | 20 | 71 | 6 | 59.5127766 |
| SRR5350740_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.011692 | None | 20 | 71 | 11 | 79.2666994 |
| GSE97140_alt | ENSG00000215717.6 | ENST00000473828.1 | TMEM167B | Protein_coding | Novel | 0.02522 | None | 20 | 71 | 6 | 59.5058231 |
| GSE45833_6_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.019515 | None | 46 | 97 | 15 | 50.2567360 |
| GSE94613_2_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.003283 | None | 46 | 97 | 9 | 36.7207022 |
| GSE104033_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.030193 | None | 46 | 97 | 5 | 49.5939805 |
| SRR5350740_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.010241 | None | 46 | 97 | 7 | 50.4424450 |
| GSE97140_alt | ENSG00000215717.6 | ENST00000479160.1 | TMEM167B | Protein_coding | Novel | 0.030193 | None | 46 | 97 | 5 | 49.5881859 |
| GSE94613_2_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.020628 | None | 53 | 104 | 44 | 179.523433 |
| GSE104033_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.02522 | None | 53 | 104 | 6 | 59.5127766 |
| SRR5350740_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.011692 | None | 53 | 104 | 11 | 79.2666994 |
| GSE97140_alt | ENSG00000215717.6 | ENST00000651489.1 | TMEM167B | Protein_coding | 5'UTR | 0.02522 | None | 53 | 104 | 6 | 59.5058231 |
| Min Ribo P value | 0.003283 |
| Min TIS P value | None |
| Ribo-seq ID | Cell or Tissue | Phenotype | Ribo-seq Source Details | PMID |
|---|
| GSE104033_alt | HAP-1 cells | Chronic myeloid leukemia | GSM2788007; GSM2788008 | 30143613; |
| GSE45833_6_alt | BJ cells | Transformed | GSM1047591 | 23594524; |
| GSE94613_2_alt | MOLM13 | Acute myeloid leukemia | GSM2481053 | 29186125; |
| GSE97140_alt | Flp-In T-REx-293 | WT | GSM2552194; GSM2552195 | 28520920; |
| SRR5350740_alt | MCF7 | Breast adenocarcinoma | GSM2538884 | 28388414; |
Mass Spectrometry Information
Function and Disease
| Functional domain prediction |  |
| Analysis | Signature Accession | Signature Description | Start location | Stop location | Score | Status of the match | InterPro accession | InterPro description | GO | Pathways |
|---|
| No results |
| Disease | Detected |
|---|
| No results |
Related Variants
| Variant ID | Consequence to sORF | rsID | Ribo-seq ID |
|---|
| 1-109090871-C-T | Non-Synonymous p.P16S | . | SRR5239058 |
Related Small Proteins with Different TISs
SmProt